Variant report

Variant	rs679914
Chromosome Location	chr11:105763280-105763281
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12573988	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs12574754	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs12575492	0.85[JPT][hapmap]
rs12577871	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs1258586	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17104703	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs17104711	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs17104747	0.85[JPT][hapmap]
rs1938912	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs1938913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1939154	0.85[JPT][hapmap]
rs2226578	0.85[JPT][hapmap]
rs2277279	0.85[JPT][hapmap]
rs2277280	0.85[JPT][hapmap]
rs2508467	0.81[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2509482	0.81[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2898230	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs3758795	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs4754137	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs4755118	0.85[JPT][hapmap]
rs4755119	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs4755121	0.89[CHB][hapmap]
rs502453	0.85[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs518639	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs535532	0.89[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs538271	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs539153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs552767	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs585464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs589904	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs602098	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs609239	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs611352	0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs617950	0.86[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs652286	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66632571	0.83[ASN][1000 genomes]
rs66698959	0.83[ASN][1000 genomes]
rs674307	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs675091	0.83[ASN][1000 genomes]
rs7116745	1.00[JPT][hapmap]
rs7945345	0.89[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1825856	chr11:105672706-105775768	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105705200-105764600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105747600-105766400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:105760800-105763400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:105760800-105764000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr11:105760800-105764400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr11:105761200-105763600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr11:105762400-105763400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr11:105762400-105763400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr11:105762600-105767400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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