Variant report

Variant	rs7945345
Chromosome Location	chr11:105799287-105799288
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs12099201	0.90[ASN][1000 genomes]
rs12573988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12574754	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12575492	0.91[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17104711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17104747	0.91[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104765	0.88[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs17104807	0.88[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs17104830	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs17391232	0.91[CEU][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17391295	1.00[CEU][hapmap];0.82[JPT][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17391463	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1938908	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1938910	0.91[CEU][hapmap];0.82[JPT][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1938912	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1938913	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs1938914	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1939154	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1940965	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2155019	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2155021	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2226578	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2277279	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2277280	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2409608	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2508467	0.85[JPT][hapmap]
rs2509482	0.85[JPT][hapmap]
rs2898229	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2898230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3737334	0.88[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs3758795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3819079	0.88[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs41302411	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs474158	0.88[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs4754137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4754138	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4755118	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4755119	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4755120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs502453	0.88[CHB][hapmap]
rs535532	1.00[CHB][hapmap]
rs539153	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs552767	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs585464	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs589904	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs602098	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs609239	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs611352	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs617950	0.89[CHB][hapmap];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs674307	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs679914	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs7116745	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs72976031	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72976037	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72978094	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72978096	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72979239	0.90[ASN][1000 genomes]
rs72979255	0.90[ASN][1000 genomes]
rs72979258	0.88[ASN][1000 genomes]
rs72979261	0.88[ASN][1000 genomes]
rs72979267	0.88[ASN][1000 genomes]
rs72979289	0.88[ASN][1000 genomes]
rs72979291	0.88[ASN][1000 genomes]
rs72979297	0.88[ASN][1000 genomes]
rs72979301	0.88[ASN][1000 genomes]
rs72981211	0.83[ASN][1000 genomes]
rs72981917	0.90[ASN][1000 genomes]
rs72981928	0.90[ASN][1000 genomes]
rs72981935	0.90[ASN][1000 genomes]
rs72981936	0.90[ASN][1000 genomes]
rs72981944	0.90[ASN][1000 genomes]
rs7933212	1.00[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105795000-105804600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:105795200-105800200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr11:105795200-105806800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:105795400-105800000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:105795400-105805600	Weak transcription	Brain Substantia Nigra	brain
6	chr11:105795600-105800000	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:105795600-105805600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:105796200-105800400	Weak transcription	Fetal Lung	lung
9	chr11:105797200-105806400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr11:105797600-105799400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:105798000-105799400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:105798000-105799800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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