Variant report

Variant	rs4754138
Chromosome Location	chr11:105780852-105780853
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs12099201	0.86[ASN][1000 genomes]
rs12573988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12574754	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12575492	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12577871	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17104703	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17104711	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104747	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17104765	0.86[ASN][1000 genomes]
rs17104807	0.86[ASN][1000 genomes]
rs17104830	0.86[ASN][1000 genomes]
rs17391232	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17391295	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17391463	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1938908	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1938910	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1938912	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1938914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1939154	0.89[ASN][1000 genomes]
rs1940965	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2155019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155021	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2226578	0.87[ASN][1000 genomes]
rs2277280	0.86[ASN][1000 genomes]
rs2409608	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2898229	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2898230	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3737334	0.86[ASN][1000 genomes]
rs3758795	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3819079	0.86[ASN][1000 genomes]
rs41302411	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs474158	0.86[ASN][1000 genomes]
rs4754137	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4755118	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4755119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755120	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4755121	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs518639	0.82[AMR][1000 genomes]
rs535532	0.80[ASN][1000 genomes]
rs538271	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs589904	0.80[ASN][1000 genomes]
rs602098	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs609239	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs611352	0.80[ASN][1000 genomes]
rs652286	0.80[ASN][1000 genomes]
rs674307	0.80[ASN][1000 genomes]
rs7116745	0.86[ASN][1000 genomes]
rs72976031	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72976037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72978094	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72978096	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72979239	0.86[ASN][1000 genomes]
rs72979255	0.86[ASN][1000 genomes]
rs72979258	0.85[ASN][1000 genomes]
rs72979261	0.85[ASN][1000 genomes]
rs72979267	0.85[ASN][1000 genomes]
rs72979289	0.85[ASN][1000 genomes]
rs72979291	0.85[ASN][1000 genomes]
rs72979297	0.85[ASN][1000 genomes]
rs72979301	0.85[ASN][1000 genomes]
rs72981211	0.80[ASN][1000 genomes]
rs72981917	0.86[ASN][1000 genomes]
rs72981928	0.86[ASN][1000 genomes]
rs72981935	0.86[ASN][1000 genomes]
rs72981936	0.86[ASN][1000 genomes]
rs72981944	0.86[ASN][1000 genomes]
rs7933212	0.86[ASN][1000 genomes]
rs7945345	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105771400-105785600	Weak transcription	Brain Angular Gyrus	brain
2	chr11:105774200-105784400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:105774200-105785600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr11:105778200-105781000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:105778400-105785600	Weak transcription	Brain Substantia Nigra	brain
6	chr11:105780400-105791400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:105780600-105781400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:105780600-105781600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr11:105780800-105781400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:105780800-105781400	Enhancers	HUVEC	blood vessel
11	chr11:105780800-105781400	Enhancers	NH-A	brain
12	chr11:105780800-105781600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:105780800-105781600	Enhancers	HMEC	breast

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