Variant report

Variant	rs1939154
Chromosome Location	chr11:105729090-105729091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs12573988	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12574754	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12575492	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12577871	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17104703	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17104711	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17104747	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17104765	0.82[JPT][hapmap]
rs17104807	0.82[JPT][hapmap]
rs17391232	0.82[JPT][hapmap]
rs17391295	0.82[JPT][hapmap]
rs17391463	0.82[JPT][hapmap]
rs1938908	0.89[ASN][1000 genomes]
rs1938910	0.82[JPT][hapmap]
rs1938912	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1938913	0.85[JPT][hapmap]
rs1938914	0.89[ASN][1000 genomes]
rs1940965	0.92[ASN][1000 genomes]
rs2155019	0.89[ASN][1000 genomes]
rs2155021	0.89[ASN][1000 genomes]
rs2226578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2277279	1.00[JPT][hapmap]
rs2277280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2409608	0.89[ASN][1000 genomes]
rs2508467	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs2509482	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs2898229	0.89[ASN][1000 genomes]
rs2898230	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3737334	0.82[JPT][hapmap]
rs3758795	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3819079	0.82[JPT][hapmap]
rs41302411	0.89[ASN][1000 genomes]
rs474158	0.82[JPT][hapmap]
rs4754137	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4754138	0.89[ASN][1000 genomes]
rs4755118	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4755119	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4755120	0.86[ASN][1000 genomes]
rs4755121	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs539153	0.85[JPT][hapmap]
rs552767	0.85[JPT][hapmap]
rs585464	0.85[JPT][hapmap]
rs589904	0.85[JPT][hapmap]
rs602098	0.85[JPT][hapmap]
rs609239	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs611352	0.85[JPT][hapmap]
rs674307	0.85[JPT][hapmap]
rs679914	0.85[JPT][hapmap]
rs7116745	0.87[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72976031	0.92[ASN][1000 genomes]
rs72976037	0.89[ASN][1000 genomes]
rs72978094	0.89[ASN][1000 genomes]
rs72978096	0.89[ASN][1000 genomes]
rs7933212	1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7945345	1.00[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1825856	chr11:105672706-105775768	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1825993	chr11:105698982-105762601	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105705200-105764600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105725200-105733400	Weak transcription	Brain Substantia Nigra	brain
3	chr11:105728600-105730200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:105728600-105734000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:105728600-105734400	Weak transcription	Brain Germinal Matrix	brain
6	chr11:105728800-105738000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:105729000-105729400	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links