Variant report

Variant	rs602098
Chromosome Location	chr11:105774214-105774215
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs12573988	1.00[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12574754	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs12575492	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs12577871	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1258586	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17104703	1.00[CHB][hapmap];0.85[JPT][hapmap];0.80[AMR][1000 genomes]
rs17104711	1.00[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17104747	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs17104765	0.88[CHB][hapmap]
rs17104807	0.88[CHB][hapmap]
rs17104830	1.00[CHB][hapmap]
rs17391463	0.88[CHB][hapmap]
rs1938908	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1938912	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1938913	0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1938914	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1939154	0.85[JPT][hapmap]
rs1940965	0.82[AMR][1000 genomes]
rs2155019	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2155021	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2226578	0.85[JPT][hapmap]
rs2277279	0.85[JPT][hapmap]
rs2277280	0.85[JPT][hapmap]
rs2409608	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2508467	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2509482	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2898229	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2898230	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs3737334	0.88[CHB][hapmap]
rs3758795	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs3819079	0.88[CHB][hapmap]
rs41302411	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs474158	0.88[CHB][hapmap]
rs4754137	1.00[CHB][hapmap];0.85[JPT][hapmap];0.80[AMR][1000 genomes]
rs4754138	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4755118	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs4755119	1.00[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4755121	1.00[CHB][hapmap]
rs502453	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[JPT][hapmap];0.92[YRI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs518639	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs535532	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.97[MKK][hapmap];0.96[TSI][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs538271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs539153	0.89[ASW][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs552767	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap]
rs585464	0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.89[MEX][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs589904	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs609239	1.00[CHB][hapmap];0.82[CHD][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs611352	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs617950	0.89[ASW][hapmap];0.94[CEU][hapmap];0.89[CHB][hapmap];0.96[CHD][hapmap];0.88[GIH][hapmap];0.86[JPT][hapmap];0.95[LWK][hapmap];0.94[MEX][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs652286	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66632571	0.87[ASN][1000 genomes]
rs66698959	0.87[ASN][1000 genomes]
rs674307	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs675091	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs679914	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7116745	1.00[JPT][hapmap]
rs72976031	0.82[AMR][1000 genomes]
rs72976037	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs72978094	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs72978096	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7945345	1.00[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1825856	chr11:105672706-105775768	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs602098	C11orf70	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105768800-105777000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105770800-105774600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:105771200-105777000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:105771400-105778000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:105771400-105785600	Weak transcription	Brain Angular Gyrus	brain
6	chr11:105773800-105774400	Enhancers	Hela-S3	cervix
7	chr11:105774000-105774600	Enhancers	Brain Substantia Nigra	brain
8	chr11:105774200-105784400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:105774200-105785600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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