Variant report

Variant	rs17391463
Chromosome Location	chr11:105813241-105813242
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:105812592..105814172-chr11:105814503..105816529,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs12099201	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12573988	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12574754	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12575492	0.91[CEU][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12577871	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17104703	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17104711	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17104747	0.91[CEU][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17104765	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs17104807	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17104830	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17391232	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17391295	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1938908	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1938910	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1938912	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1938914	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1939154	0.82[JPT][hapmap]
rs1940965	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2155019	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2155021	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2226578	0.82[JPT][hapmap]
rs2277279	1.00[CEU][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs2277280	0.81[CHD][hapmap];0.82[JPT][hapmap]
rs2409608	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2898229	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2898230	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3737334	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3758795	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3819079	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];1.00[ASN][1000 genomes]
rs41302411	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs474158	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];1.00[ASN][1000 genomes]
rs4754137	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4754138	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4755118	1.00[CEU][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4755119	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4755120	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4755121	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs502453	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs535532	0.88[CHB][hapmap]
rs552767	0.88[CHB][hapmap]
rs562546	0.82[JPT][hapmap]
rs589904	0.88[CHB][hapmap]
rs602098	0.88[CHB][hapmap]
rs609239	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];0.82[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs611352	0.88[CHB][hapmap]
rs674307	0.88[CHB][hapmap]
rs7116745	0.81[CHD][hapmap]
rs72976031	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72976037	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72978094	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72978096	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72979239	1.00[ASN][1000 genomes]
rs72979255	1.00[ASN][1000 genomes]
rs72979258	0.98[ASN][1000 genomes]
rs72979261	0.98[ASN][1000 genomes]
rs72979267	0.98[ASN][1000 genomes]
rs72979289	0.98[ASN][1000 genomes]
rs72979291	0.98[ASN][1000 genomes]
rs72979297	0.98[ASN][1000 genomes]
rs72979301	0.98[ASN][1000 genomes]
rs72981211	0.93[ASN][1000 genomes]
rs72981917	1.00[ASN][1000 genomes]
rs72981928	1.00[ASN][1000 genomes]
rs72981935	1.00[ASN][1000 genomes]
rs72981936	1.00[ASN][1000 genomes]
rs72981944	1.00[ASN][1000 genomes]
rs7945345	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105807600-105815800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:105807600-105819400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:105807800-105813800	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:105808800-105813400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:105808800-105813600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:105808800-105813800	Weak transcription	Brain Anterior Caudate	brain
7	chr11:105808800-105816800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr11:105808800-105816800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr11:105811000-105816000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr11:105812200-105814400	Enhancers	Fetal Lung	lung
11	chr11:105812400-105813400	Enhancers	Adipose Nuclei	Adipose
12	chr11:105812400-105814000	Enhancers	Brain Cingulate Gyrus	brain
13	chr11:105812400-105814000	Enhancers	Brain Substantia Nigra	brain
14	chr11:105812800-105813800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:105813000-105813400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr11:105813000-105817200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr11:105813200-105813600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:105813200-105813800	Enhancers	Brain Angular Gyrus	brain
19	chr11:105813200-105814200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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