Variant report

Variant	rs12573988
Chromosome Location	chr11:105770213-105770214
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs12099201	0.86[ASN][1000 genomes]
rs12574754	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12575492	0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12577871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17104703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17104711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104747	0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17104765	0.86[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs17104807	0.86[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs17104830	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs17391232	0.89[CEU][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17391295	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17391463	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1938908	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1938910	0.89[CEU][hapmap];0.82[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1938912	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1938913	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs1938914	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1939154	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1940965	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2155019	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155021	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2226578	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2277279	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2277280	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2409608	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2508467	0.85[JPT][hapmap]
rs2509482	0.85[JPT][hapmap]
rs2898229	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2898230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3737334	0.86[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs3758795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3819079	0.86[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs41302411	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs474158	0.86[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs4754137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4754138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755118	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4755119	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755120	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4755121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs502453	0.86[CHB][hapmap]
rs518639	0.82[AMR][1000 genomes]
rs535532	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs538271	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs539153	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs552767	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs585464	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs589904	1.00[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs602098	1.00[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs609239	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs611352	1.00[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs617950	0.88[CHB][hapmap]
rs652286	0.80[ASN][1000 genomes]
rs674307	1.00[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs679914	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs7116745	0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs72976031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72976037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72978094	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72978096	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72979239	0.86[ASN][1000 genomes]
rs72979255	0.86[ASN][1000 genomes]
rs72979258	0.85[ASN][1000 genomes]
rs72979261	0.85[ASN][1000 genomes]
rs72979267	0.85[ASN][1000 genomes]
rs72979289	0.85[ASN][1000 genomes]
rs72979291	0.85[ASN][1000 genomes]
rs72979297	0.85[ASN][1000 genomes]
rs72979301	0.85[ASN][1000 genomes]
rs72981211	0.80[ASN][1000 genomes]
rs72981917	0.86[ASN][1000 genomes]
rs72981928	0.86[ASN][1000 genomes]
rs72981935	0.86[ASN][1000 genomes]
rs72981936	0.86[ASN][1000 genomes]
rs72981944	0.86[ASN][1000 genomes]
rs7933212	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7945345	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1825856	chr11:105672706-105775768	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105768800-105777000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105769600-105771200	Enhancers	Brain Hippocampus Middle	brain
3	chr11:105769600-105771400	Enhancers	Brain Angular Gyrus	brain
4	chr11:105769600-105771400	Enhancers	Brain Substantia Nigra	brain
5	chr11:105769800-105770400	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr11:105769800-105770800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:105769800-105771200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr11:105770000-105771200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:105770200-105770600	Active TSS	Brain Anterior Caudate	brain
10	chr11:105770200-105770800	Flanking Active TSS	Brain Cingulate Gyrus	brain

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