Variant report

Variant	rs17391295
Chromosome Location	chr11:105807886-105807887
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs12099201	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12573988	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12574754	1.00[CEU][hapmap];0.82[JPT][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12575492	0.91[CEU][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12577871	1.00[CEU][hapmap];0.82[JPT][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17104703	1.00[CEU][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17104711	1.00[CEU][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17104747	0.91[CEU][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17104765	0.88[CHB][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs17104807	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17104830	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17391232	0.91[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17391463	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1938908	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1938910	0.91[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1938912	1.00[CEU][hapmap];0.82[JPT][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1938914	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1939154	0.82[JPT][hapmap]
rs1940965	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2155019	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2155021	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2226578	0.82[JPT][hapmap]
rs2277279	1.00[CEU][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs2277280	0.82[JPT][hapmap]
rs2409608	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2898229	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2898230	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3737334	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3758795	1.00[CEU][hapmap];0.82[JPT][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3819079	0.88[CHB][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];1.00[ASN][1000 genomes]
rs41302411	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs474158	0.88[CHB][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];1.00[ASN][1000 genomes]
rs4754137	1.00[CEU][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4754138	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4755118	1.00[CEU][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4755119	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4755120	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4755121	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs502453	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs562546	0.82[JPT][hapmap]
rs609239	1.00[CEU][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72976031	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72976037	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72978094	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72978096	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72979239	1.00[ASN][1000 genomes]
rs72979255	1.00[ASN][1000 genomes]
rs72979258	0.98[ASN][1000 genomes]
rs72979261	0.98[ASN][1000 genomes]
rs72979267	0.98[ASN][1000 genomes]
rs72979289	0.98[ASN][1000 genomes]
rs72979291	0.98[ASN][1000 genomes]
rs72979297	0.98[ASN][1000 genomes]
rs72979301	0.98[ASN][1000 genomes]
rs72981211	0.93[ASN][1000 genomes]
rs72981917	1.00[ASN][1000 genomes]
rs72981928	1.00[ASN][1000 genomes]
rs72981935	1.00[ASN][1000 genomes]
rs72981936	1.00[ASN][1000 genomes]
rs72981944	1.00[ASN][1000 genomes]
rs7945345	1.00[CEU][hapmap];0.82[JPT][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105799400-105810200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:105805200-105808200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr11:105805200-105809000	Enhancers	Fetal Lung	lung
4	chr11:105805400-105808800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr11:105805600-105808000	Enhancers	Brain Substantia Nigra	brain
6	chr11:105805600-105808400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:105805600-105809000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr11:105805800-105808800	Enhancers	HMEC	breast
9	chr11:105806000-105808800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:105806400-105808000	Enhancers	Brain Anterior Caudate	brain
11	chr11:105806400-105808800	Enhancers	Hela-S3	cervix
12	chr11:105806400-105809400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:105806600-105808800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr11:105806600-105808800	Enhancers	Fetal Kidney	kidney
15	chr11:105806800-105808400	Weak transcription	NHEK	skin
16	chr11:105806800-105808800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:105806800-105810400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr11:105807000-105808600	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr11:105807000-105809200	Enhancers	HUVEC	blood vessel
20	chr11:105807000-105810400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:105807000-105810600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr11:105807200-105808200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr11:105807200-105808200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr11:105807200-105808200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr11:105807200-105808200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:105807200-105808400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr11:105807200-105808600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr11:105807400-105808400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:105807400-105808400	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr11:105807400-105808400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:105807400-105812400	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr11:105807600-105808000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:105807600-105808800	Enhancers	NH-A	brain
34	chr11:105807600-105815800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr11:105807600-105819400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:105807800-105812400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr11:105807800-105812600	Weak transcription	Brain Angular Gyrus	brain
38	chr11:105807800-105813800	Weak transcription	Brain Hippocampus Middle	brain

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