Variant report

Variant	rs72979258
Chromosome Location	chr11:105851466-105851467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:105844384..105846646-chr11:105849182..105851873,3	K562	blood:

Variant related genes	Relation type
ENSG00000252081	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs12099201	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12573988	0.85[ASN][1000 genomes]
rs12574754	0.83[ASN][1000 genomes]
rs12575492	0.88[ASN][1000 genomes]
rs12577871	0.88[ASN][1000 genomes]
rs17104703	0.82[ASN][1000 genomes]
rs17104711	0.85[ASN][1000 genomes]
rs17104747	0.88[ASN][1000 genomes]
rs17104765	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17104807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17104830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17391232	0.98[ASN][1000 genomes]
rs17391295	0.98[ASN][1000 genomes]
rs17391463	0.98[ASN][1000 genomes]
rs1938908	0.85[ASN][1000 genomes]
rs1938910	0.98[ASN][1000 genomes]
rs1938912	0.88[ASN][1000 genomes]
rs1938914	0.85[ASN][1000 genomes]
rs1940965	0.82[ASN][1000 genomes]
rs2155019	0.85[ASN][1000 genomes]
rs2155021	0.85[ASN][1000 genomes]
rs2409608	0.85[ASN][1000 genomes]
rs2898229	0.85[ASN][1000 genomes]
rs2898230	0.88[ASN][1000 genomes]
rs3737334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3758795	0.88[ASN][1000 genomes]
rs3819079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41302411	0.85[ASN][1000 genomes]
rs474158	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4754137	0.82[ASN][1000 genomes]
rs4754138	0.85[ASN][1000 genomes]
rs4755118	0.80[ASN][1000 genomes]
rs4755119	0.85[ASN][1000 genomes]
rs4755120	0.88[ASN][1000 genomes]
rs4755121	0.88[ASN][1000 genomes]
rs609239	0.85[ASN][1000 genomes]
rs72645426	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72976031	0.82[ASN][1000 genomes]
rs72976037	0.85[ASN][1000 genomes]
rs72978094	0.85[ASN][1000 genomes]
rs72978096	0.85[ASN][1000 genomes]
rs72979239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72979255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72979261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72979267	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72979289	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72979291	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72979297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72979301	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981211	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72981917	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72981928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72981935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72981936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72981944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7945345	0.88[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105843800-105866400	Weak transcription	Brain Angular Gyrus	brain
2	chr11:105848200-105880400	Weak transcription	Fetal Brain Male	brain
3	chr11:105849800-105866600	Weak transcription	Brain Substantia Nigra	brain
4	chr11:105850600-105852200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:105850800-105852000	Weak transcription	Pancreas	Pancrea
6	chr11:105851400-105854400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:105851400-105862600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr11:105851400-105864000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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