Variant report

Variant rs57522322
Chromosome Location chr20:25447791-25447792
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:93 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:25425600-25453200 Weak transcription Small Intestine intestine
2 chr20:25426400-25450200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
3 chr20:25427200-25488200 Weak transcription Stomach Mucosa stomach
4 chr20:25429400-25463200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr20:25429800-25458800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
6 chr20:25430200-25484400 Strong transcription Fetal Stomach stomach
7 chr20:25431800-25484200 Weak transcription Pancreatic Islets Pancreatic Islet
8 chr20:25432400-25450400 Strong transcription Thymus Thymus
9 chr20:25432600-25452400 Strong transcription Breast Myoepithelial Primary Cells Breast
10 chr20:25434000-25447800 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr20:25434400-25460800 Weak transcription Fetal Heart heart
12 chr20:25435600-25459000 Weak transcription Rectal Mucosa Donor 29 rectum
13 chr20:25435800-25450200 Weak transcription Fetal Kidney kidney
14 chr20:25435800-25465600 Weak transcription NH-A brain
15 chr20:25436000-25448200 Weak transcription Brain Cingulate Gyrus brain
16 chr20:25436200-25465200 Weak transcription Muscle Satellite Cultured Cells --
17 chr20:25437800-25454600 Strong transcription Fetal Adrenal Gland Adrenal Gland
18 chr20:25438000-25450800 Strong transcription Dnd41 blood
19 chr20:25438000-25452600 Strong transcription Brain Germinal Matrix brain
20 chr20:25438000-25456400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
21 chr20:25438200-25449200 Strong transcription Liver Liver
22 chr20:25438200-25449400 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
23 chr20:25438200-25450200 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
24 chr20:25438200-25452400 Strong transcription Fetal Brain Female brain
25 chr20:25438400-25449000 Strong transcription H9 Cell Line embryonic stem cell
26 chr20:25438400-25451800 Strong transcription Cortex derived primary cultured neurospheres brain
27 chr20:25438400-25452600 Strong transcription Ovary ovary
28 chr20:25438400-25455400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
29 chr20:25438600-25448800 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
30 chr20:25438600-25451800 Strong transcription Stomach Smooth Muscle stomach
31 chr20:25438600-25453200 Strong transcription Fetal Intestine Small intestine
32 chr20:25438600-25466200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
33 chr20:25438800-25449200 Strong transcription HUES6 Cell Line embryonic stem cell
34 chr20:25438800-25455000 Strong transcription Fetal Intestine Large intestine
35 chr20:25438800-25472600 Strong transcription HepG2 liver
36 chr20:25440600-25466600 Weak transcription Left Ventricle heart
37 chr20:25441000-25452200 Strong transcription A549 lung
38 chr20:25441200-25450200 Weak transcription Colonic Mucosa Colon
39 chr20:25441200-25450600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
40 chr20:25441800-25449000 Strong transcription H1 Cell Line embryonic stem cell
41 chr20:25441800-25449400 Strong transcription HUES64 Cell Line embryonic stem cell
42 chr20:25441800-25455000 Strong transcription iPS-20b Cell Line embryonic stem cell
43 chr20:25442200-25460000 Weak transcription Brain Angular Gyrus brain
44 chr20:25442800-25450800 Weak transcription Osteobl bone
45 chr20:25443200-25459000 Weak transcription Brain Inferior Temporal Lobe brain
46 chr20:25443800-25457400 Strong transcription iPS-18 Cell Line embryonic stem cell
47 chr20:25444000-25448600 Strong transcription Fetal Lung lung
48 chr20:25444000-25452000 Strong transcription HUES48 Cell Line embryonic stem cell
49 chr20:25444200-25452600 Strong transcription Duodenum Smooth Muscle Duodenum
50 chr20:25444400-25450400 Strong transcription iPS-15b Cell Line embryonic stem cell

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