Variant report

Variant rs58410604
Chromosome Location chr20:25334321-25334322
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:25292600-25351600 Weak transcription NHDF-Ad bronchial
2 chr20:25305400-25335000 Weak transcription Primary B cells from cord blood blood
3 chr20:25306200-25335800 Weak transcription Fetal Adrenal Gland Adrenal Gland
4 chr20:25310400-25334400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr20:25317600-25335600 Weak transcription Small Intestine intestine
6 chr20:25319200-25348400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
7 chr20:25319400-25337000 Weak transcription Fetal Muscle Trunk muscle
8 chr20:25319600-25334600 Weak transcription Fetal Brain Female brain
9 chr20:25319600-25337000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr20:25319800-25334400 Weak transcription Fetal Kidney kidney
11 chr20:25320000-25336800 Weak transcription Primary T regulatory cells fromperipheralblood blood
12 chr20:25322400-25336600 Weak transcription Fetal Heart heart
13 chr20:25324200-25337200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr20:25325400-25336600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
15 chr20:25325600-25336600 Weak transcription Dnd41 blood
16 chr20:25327400-25361400 Weak transcription Primary T cells from cord blood blood
17 chr20:25327800-25335600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
18 chr20:25328000-25337000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
19 chr20:25330400-25334400 Weak transcription Aorta Aorta
20 chr20:25331600-25335600 Weak transcription HepG2 liver
21 chr20:25332200-25334400 Weak transcription Gastric stomach
22 chr20:25332200-25335600 Weak transcription Cortex derived primary cultured neurospheres brain
23 chr20:25332200-25337400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
24 chr20:25333000-25337200 Enhancers Brain Angular Gyrus brain
25 chr20:25333200-25334600 Enhancers NHLF lung
26 chr20:25333200-25335200 Enhancers Rectal Smooth Muscle rectum
27 chr20:25333200-25335600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr20:25333200-25335600 Enhancers Brain Hippocampus Middle brain
29 chr20:25333400-25334400 Weak transcription Primary T killer naive cells fromperipheralblood blood
30 chr20:25333400-25334400 Enhancers Colon Smooth Muscle Colon
31 chr20:25333400-25335200 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
32 chr20:25333400-25335800 Enhancers HUES64 Cell Line embryonic stem cell
33 chr20:25333400-25338800 Enhancers Brain Substantia Nigra brain
34 chr20:25333600-25336800 Enhancers Brain Cingulate Gyrus brain
35 chr20:25333600-25339200 Enhancers HUES48 Cell Line embryonic stem cell
36 chr20:25333600-25339400 Enhancers Brain Inferior Temporal Lobe brain
37 chr20:25333800-25335200 Enhancers Duodenum Smooth Muscle Duodenum
38 chr20:25334000-25334400 Weak transcription Lung lung
39 chr20:25334000-25334600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
40 chr20:25334000-25334600 Flanking Active TSS Stomach Smooth Muscle stomach
41 chr20:25334000-25334800 Enhancers iPS-15b Cell Line embryonic stem cell
42 chr20:25334000-25334800 Enhancers Fetal Intestine Small intestine
43 chr20:25334000-25335200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr20:25334000-25335400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
45 chr20:25334000-25335400 Enhancers Fetal Intestine Large intestine
46 chr20:25334000-25335400 Enhancers Rectal Mucosa Donor 29 rectum
47 chr20:25334000-25335800 Enhancers HUES6 Cell Line embryonic stem cell
48 chr20:25334000-25336800 Enhancers iPS-20b Cell Line embryonic stem cell
49 chr20:25334000-25337000 Enhancers iPS-18 Cell Line embryonic stem cell
50 chr20:25334000-25337000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --

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