Variant report

Variant	rs57553296
Chromosome Location	chr10:96426118-96426119
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs17878279	1.00[AMR][1000 genomes]
rs17878682	1.00[AMR][1000 genomes]
rs17882646	1.00[AMR][1000 genomes]
rs56710710	1.00[AMR][1000 genomes]
rs56717990	1.00[AMR][1000 genomes]
rs56803012	1.00[AMR][1000 genomes]
rs56852421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56949790	1.00[AMR][1000 genomes]
rs57565992	1.00[AMR][1000 genomes]
rs58004982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58138713	1.00[AMR][1000 genomes]
rs58285722	1.00[AFR][1000 genomes]
rs58369511	1.00[AFR][1000 genomes]
rs58398690	1.00[AMR][1000 genomes]
rs58424017	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59109809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59210943	1.00[AMR][1000 genomes]
rs59290197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59536673	1.00[AMR][1000 genomes]
rs59636573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59945140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60223717	1.00[AMR][1000 genomes]
rs60526621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60933664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60998888	1.00[AMR][1000 genomes]
rs61167841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61460642	1.00[AMR][1000 genomes]
rs61629168	1.00[AMR][1000 genomes]
rs61703030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61704503	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv934280	chr10:96401297-96540495	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1040106	chr10:96405296-96514994	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1040976	chr10:96405296-96516804	Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv551954	chr10:96405329-96521249	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv522538	chr10:96405329-96547463	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1049225	chr10:96405502-96516804	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv1052478	chr10:96406313-96516804	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv1037516	chr10:96407511-96516804	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv1047944	chr10:96407825-96563288	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv1050653	chr10:96407825-96634161	Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1049341	chr10:96416809-96471236	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv1043604	chr10:96424393-96486504	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96423600-96426200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:96424000-96426200	Weak transcription	Stomach Mucosa	stomach
3	chr10:96424600-96434200	Weak transcription	Gastric	stomach
4	chr10:96426000-96426600	Enhancers	Fetal Intestine Large	intestine

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