Variant report

Variant	rs61704503
Chromosome Location	chr10:96216219-96216220
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56852421	1.00[AFR][1000 genomes]
rs57553296	1.00[AFR][1000 genomes]
rs57730765	1.00[AMR][1000 genomes]
rs58004982	1.00[AFR][1000 genomes]
rs58285722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58369511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59109809	1.00[AFR][1000 genomes]
rs59290197	1.00[AFR][1000 genomes]
rs59894598	1.00[AMR][1000 genomes]
rs59945140	1.00[AFR][1000 genomes]
rs60526621	1.00[AFR][1000 genomes]
rs60933664	1.00[AFR][1000 genomes]
rs61167841	1.00[AFR][1000 genomes]
rs61703030	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv1053747	chr10:96211618-96366396	Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96190800-96234600	Weak transcription	Osteobl	bone
2	chr10:96198400-96218200	Weak transcription	Aorta	Aorta
3	chr10:96199400-96219600	Weak transcription	Pancreas	Pancrea
4	chr10:96200200-96219400	Weak transcription	Left Ventricle	heart
5	chr10:96201200-96219200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:96203000-96218600	Weak transcription	Ovary	ovary
7	chr10:96203000-96239600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr10:96203400-96242800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:96203600-96218400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:96203800-96217200	Weak transcription	HepG2	liver
11	chr10:96203800-96219600	Weak transcription	Brain Angular Gyrus	brain
12	chr10:96204000-96221000	Weak transcription	Liver	Liver
13	chr10:96204200-96243400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr10:96206200-96218000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr10:96209000-96218400	Weak transcription	Lung	lung
16	chr10:96209600-96219600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:96210200-96248800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr10:96211400-96218200	Weak transcription	Fetal Intestine Large	intestine
19	chr10:96211600-96218000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr10:96211600-96218600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr10:96211600-96220800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr10:96211600-96224000	Weak transcription	Psoas Muscle	Psoas
23	chr10:96211600-96292200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:96212000-96218400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr10:96212200-96216400	Weak transcription	Brain Substantia Nigra	brain
26	chr10:96212200-96218000	Weak transcription	Fetal Heart	heart
27	chr10:96212200-96219000	Weak transcription	Adipose Nuclei	Adipose
28	chr10:96212200-96219000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr10:96212200-96219400	Weak transcription	Fetal Kidney	kidney
30	chr10:96212400-96222800	Weak transcription	Fetal Lung	lung
31	chr10:96212600-96218000	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr10:96212600-96248600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr10:96212800-96221000	Weak transcription	Brain Hippocampus Middle	brain
34	chr10:96213000-96222800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr10:96213000-96234400	Weak transcription	HSMM	muscle
36	chr10:96213800-96219000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr10:96215600-96216400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
38	chr10:96215600-96216600	ZNF genes & repeats	Brain Anterior Caudate	brain
39	chr10:96215600-96255200	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr10:96215800-96218000	Weak transcription	Fetal Stomach	stomach
41	chr10:96215800-96218200	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr10:96215800-96218200	Weak transcription	Fetal Intestine Small	intestine
43	chr10:96215800-96219000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr10:96216200-96218000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr10:96216200-96219000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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