Variant report

Variant	rs58285722
Chromosome Location	chr10:96286008-96286009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs56852421	1.00[AFR][1000 genomes]
rs57553296	1.00[AFR][1000 genomes]
rs57730765	1.00[AMR][1000 genomes]
rs58004982	1.00[AFR][1000 genomes]
rs58369511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58424017	0.90[AFR][1000 genomes]
rs59109809	1.00[AFR][1000 genomes]
rs59290197	1.00[AFR][1000 genomes]
rs59636573	1.00[AFR][1000 genomes]
rs59894598	1.00[AMR][1000 genomes]
rs59945140	1.00[AFR][1000 genomes]
rs60181876	1.00[AMR][1000 genomes]
rs60526621	1.00[AFR][1000 genomes]
rs60933664	1.00[AFR][1000 genomes]
rs61167841	1.00[AFR][1000 genomes]
rs61703030	1.00[AFR][1000 genomes]
rs61704503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1053747	chr10:96211618-96366396	Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96211600-96292200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:96223200-96293600	Weak transcription	NHDF-Ad	bronchial
3	chr10:96244400-96304600	Weak transcription	Aorta	Aorta
4	chr10:96249200-96286200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:96249400-96288600	Weak transcription	Gastric	stomach
6	chr10:96250800-96294000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr10:96250800-96297400	Weak transcription	Small Intestine	intestine
8	chr10:96257000-96293400	Weak transcription	HepG2	liver
9	chr10:96261000-96304400	Weak transcription	NH-A	brain
10	chr10:96264200-96296800	Weak transcription	Brain Germinal Matrix	brain
11	chr10:96266000-96304600	Weak transcription	Fetal Kidney	kidney
12	chr10:96267400-96303800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:96268400-96304400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr10:96268800-96297200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:96268800-96304400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:96269600-96292000	Weak transcription	Brain Hippocampus Middle	brain
17	chr10:96270200-96304200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:96271800-96294000	Weak transcription	Psoas Muscle	Psoas
19	chr10:96271800-96304000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:96272000-96294000	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr10:96272000-96304600	Weak transcription	HSMMtube	muscle
22	chr10:96272200-96295800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr10:96272400-96293000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:96272600-96293400	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr10:96273600-96294000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr10:96274400-96304000	Weak transcription	Stomach Mucosa	stomach
27	chr10:96274400-96304400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr10:96274600-96290800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr10:96274600-96292400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr10:96274600-96304000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr10:96277000-96292400	Weak transcription	Primary B cells from peripheral blood	blood
32	chr10:96277200-96294000	Weak transcription	Left Ventricle	heart
33	chr10:96278400-96290800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr10:96279600-96297200	Weak transcription	Spleen	Spleen
35	chr10:96280400-96304800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr10:96281400-96294000	Weak transcription	Brain Angular Gyrus	brain
37	chr10:96281400-96294600	Weak transcription	Brain Cingulate Gyrus	brain
38	chr10:96281600-96286400	Strong transcription	Adipose Nuclei	Adipose
39	chr10:96281600-96293600	Weak transcription	Brain Anterior Caudate	brain
40	chr10:96281800-96296800	Weak transcription	Fetal Brain Female	brain
41	chr10:96282000-96293800	Weak transcription	Stomach Smooth Muscle	stomach
42	chr10:96282200-96304200	Weak transcription	Colonic Mucosa	Colon
43	chr10:96282400-96286200	Strong transcription	Fetal Stomach	stomach
44	chr10:96282400-96286400	Strong transcription	Fetal Intestine Small	intestine
45	chr10:96282400-96290600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr10:96283400-96286200	Strong transcription	Fetal Intestine Large	intestine
47	chr10:96283400-96286200	Strong transcription	Lung	lung
48	chr10:96283800-96287000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr10:96284000-96293600	Weak transcription	Brain Substantia Nigra	brain
50	chr10:96284000-96304200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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