Variant report

Variant	rs59945140
Chromosome Location	chr10:96319858-96319859
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96303992..96306869-chr10:96319557..96321982,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119969	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17878279	1.00[AMR][1000 genomes]
rs17878682	1.00[AMR][1000 genomes]
rs56852421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56949790	1.00[AMR][1000 genomes]
rs57553296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58004982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58138713	1.00[AMR][1000 genomes]
rs58285722	1.00[AFR][1000 genomes]
rs58369511	1.00[AFR][1000 genomes]
rs58424017	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59109809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59290197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59536673	1.00[AMR][1000 genomes]
rs59636573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60526621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60933664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60998888	1.00[AMR][1000 genomes]
rs61167841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61629168	1.00[AMR][1000 genomes]
rs61703030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61704503	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1053747	chr10:96211618-96366396	Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96306400-96321200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:96306400-96325400	Weak transcription	Lung	lung
3	chr10:96306400-96330600	Weak transcription	Placenta	Placenta
4	chr10:96306400-96357200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr10:96306400-96365600	Weak transcription	Esophagus	oesophagus
6	chr10:96306400-96370400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:96306400-96370600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr10:96306400-96371000	Weak transcription	Ovary	ovary
9	chr10:96306600-96349800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:96306600-96353800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:96306600-96379200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:96306800-96323000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr10:96306800-96330400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:96306800-96348000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr10:96306800-96348200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr10:96306800-96348400	Weak transcription	Primary B cells from cord blood	blood
17	chr10:96306800-96349800	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr10:96306800-96357200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr10:96306800-96373000	Weak transcription	Primary T cells from cord blood	blood
20	chr10:96307000-96358200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:96307000-96375000	Weak transcription	Osteobl	bone
22	chr10:96307200-96320000	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr10:96307200-96371200	Weak transcription	Fetal Brain Male	brain
24	chr10:96307600-96325400	Weak transcription	NHLF	lung
25	chr10:96307600-96327800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:96307600-96356000	Weak transcription	NHDF-Ad	bronchial
27	chr10:96307600-96373200	Weak transcription	Brain Germinal Matrix	brain
28	chr10:96307800-96348200	Weak transcription	NHEK	skin
29	chr10:96307800-96373000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr10:96308000-96373200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:96309400-96340800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr10:96309400-96354000	Weak transcription	K562	blood
33	chr10:96309600-96372800	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr10:96309600-96377000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr10:96310200-96339800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr10:96310400-96339800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr10:96312200-96334400	Strong transcription	A549	lung
38	chr10:96312200-96354000	Weak transcription	Gastric	stomach
39	chr10:96312400-96324800	Strong transcription	Hela-S3	cervix
40	chr10:96312800-96372200	Strong transcription	Dnd41	blood
41	chr10:96314000-96320600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr10:96314000-96330800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr10:96314200-96339800	Strong transcription	Fetal Thymus	thymus
44	chr10:96314200-96373400	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr10:96314400-96325800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr10:96315000-96369200	Weak transcription	Fetal Kidney	kidney
47	chr10:96315200-96323800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr10:96315200-96332200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr10:96315600-96322800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr10:96315600-96325400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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