Variant report

Variant	rs58369511
Chromosome Location	chr10:96211395-96211396
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56852421	1.00[AFR][1000 genomes]
rs57553296	1.00[AFR][1000 genomes]
rs57730765	1.00[AMR][1000 genomes]
rs58004982	1.00[AFR][1000 genomes]
rs58285722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59109809	1.00[AFR][1000 genomes]
rs59290197	1.00[AFR][1000 genomes]
rs59894598	1.00[AMR][1000 genomes]
rs59945140	1.00[AFR][1000 genomes]
rs60526621	1.00[AFR][1000 genomes]
rs60933664	1.00[AFR][1000 genomes]
rs61167841	1.00[AFR][1000 genomes]
rs61703030	1.00[AFR][1000 genomes]
rs61704503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96188400-96213600	Weak transcription	Stomach Mucosa	stomach
2	chr10:96190800-96234600	Weak transcription	Osteobl	bone
3	chr10:96192000-96211400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:96198400-96218200	Weak transcription	Aorta	Aorta
5	chr10:96199200-96215400	Weak transcription	Fetal Stomach	stomach
6	chr10:96199400-96211400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr10:96199400-96211400	Weak transcription	Psoas Muscle	Psoas
8	chr10:96199400-96212000	Weak transcription	Adipose Nuclei	Adipose
9	chr10:96199400-96215200	Weak transcription	Placenta	Placenta
10	chr10:96199400-96219600	Weak transcription	Pancreas	Pancrea
11	chr10:96200200-96211400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:96200200-96219400	Weak transcription	Left Ventricle	heart
13	chr10:96201200-96219200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr10:96203000-96218600	Weak transcription	Ovary	ovary
15	chr10:96203000-96239600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr10:96203200-96215400	Weak transcription	Fetal Intestine Small	intestine
17	chr10:96203400-96212000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr10:96203400-96242800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:96203600-96211400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:96203600-96218400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr10:96203800-96211400	Weak transcription	Brain Substantia Nigra	brain
22	chr10:96203800-96217200	Weak transcription	HepG2	liver
23	chr10:96203800-96219600	Weak transcription	Brain Angular Gyrus	brain
24	chr10:96204000-96221000	Weak transcription	Liver	Liver
25	chr10:96204200-96212000	Weak transcription	Brain Anterior Caudate	brain
26	chr10:96204200-96213400	Weak transcription	A549	lung
27	chr10:96204200-96243400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr10:96206200-96218000	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr10:96207600-96213200	Weak transcription	HUVEC	blood vessel
30	chr10:96209000-96218400	Weak transcription	Lung	lung
31	chr10:96209400-96213000	Strong transcription	HSMM	muscle
32	chr10:96209600-96219600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:96210200-96211400	Weak transcription	Brain Hippocampus Middle	brain
34	chr10:96210200-96211400	Weak transcription	Fetal Lung	lung
35	chr10:96210200-96215800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr10:96210200-96248800	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr10:96210400-96211600	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr10:96210600-96215200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr10:96211200-96211400	Strong transcription	Fetal Intestine Large	intestine
40	chr10:96211200-96211600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr10:96211200-96211600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
42	chr10:96211200-96211600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
43	chr10:96211200-96212200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr10:96211200-96212200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr10:96211200-96212200	ZNF genes & repeats	Fetal Heart	heart
46	chr10:96211200-96212600	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr10:96211200-96212800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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