Variant report

Variant	rs57564262
Chromosome Location	chr5:37176466-37176467
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs16903524	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16903527	1.00[AMR][1000 genomes]
rs16903598	1.00[AMR][1000 genomes]
rs16903600	1.00[AMR][1000 genomes]
rs16903603	1.00[AMR][1000 genomes]
rs16903604	1.00[AMR][1000 genomes]
rs34243761	1.00[AMR][1000 genomes]
rs56725398	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58089157	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58132646	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59150742	1.00[AMR][1000 genomes]
rs59775401	1.00[AMR][1000 genomes]
rs60290055	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60570427	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61005381	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61062002	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61561054	1.00[AMR][1000 genomes]
rs61732654	1.00[AMR][1000 genomes]
rs6863554	1.00[AMR][1000 genomes]
rs6878467	1.00[AMR][1000 genomes]
rs73066405	1.00[AMR][1000 genomes]
rs73068410	1.00[AMR][1000 genomes]
rs73068415	1.00[AMR][1000 genomes]
rs73068449	1.00[AMR][1000 genomes]
rs73068474	1.00[AMR][1000 genomes]
rs73093847	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73093898	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73095712	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73095713	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73095726	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73095728	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73095735	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73095736	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73095753	1.00[AMR][1000 genomes]
rs73095756	1.00[AMR][1000 genomes]
rs7704088	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7720731	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7727585	1.00[AMR][1000 genomes]
rs7728924	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525478	chr5:36804225-37349895	Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	esv1793961	chr5:36866835-37361728	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv530225	chr5:36886635-37331912	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv1024051	chr5:36899712-37303001	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv537725	chr5:36899712-37303001	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv530226	chr5:36906377-37606367	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
7	esv1802391	chr5:36958598-37242600	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv534064	chr5:37054962-37586210	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
9	nsv881511	chr5:37088627-37552852	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
10	nsv597823	chr5:37111565-37430365	Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
11	nsv1026554	chr5:37112133-37734859	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
12	nsv537726	chr5:37112133-37734859	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
13	nsv1025988	chr5:37115142-37586211	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
14	nsv537727	chr5:37115142-37586211	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
15	nsv830265	chr5:37152221-37312233	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
16	nsv530227	chr5:37157106-37571999	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
17	nsv968904	chr5:37170434-37231344	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
18	nsv880406	chr5:37173930-37345270	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
19	nsv880839	chr5:37173930-37465126	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37112200-37198200	Weak transcription	Small Intestine	intestine
2	chr5:37113600-37222200	Weak transcription	Psoas Muscle	Psoas
3	chr5:37136200-37197200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr5:37138400-37196800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:37138600-37179600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr5:37143400-37189600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:37147200-37200600	Strong transcription	HSMM	muscle
8	chr5:37148000-37182000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:37148600-37189400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:37151600-37197400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr5:37158000-37177600	Weak transcription	Fetal Brain Male	brain
12	chr5:37159600-37197400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr5:37161000-37207200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:37161200-37179400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:37161200-37183800	Strong transcription	Dnd41	blood
16	chr5:37161200-37197400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr5:37161400-37178200	Strong transcription	NHDF-Ad	bronchial
18	chr5:37161600-37177600	Strong transcription	Fetal Brain Female	brain
19	chr5:37161600-37179600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr5:37162000-37179800	Strong transcription	Placenta	Placenta
21	chr5:37162200-37179800	Strong transcription	Fetal Muscle Leg	muscle
22	chr5:37162400-37188600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr5:37162600-37178600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr5:37162600-37180200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr5:37162600-37197400	Strong transcription	Adipose Nuclei	Adipose
26	chr5:37163000-37179800	Strong transcription	Fetal Thymus	thymus
27	chr5:37163200-37178000	Strong transcription	Duodenum Smooth Muscle	Duodenum
28	chr5:37163200-37179600	Strong transcription	Skeletal Muscle Female	skeletal muscle
29	chr5:37163400-37177000	Strong transcription	Primary hematopoietic stem cells	blood
30	chr5:37165200-37179600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr5:37165400-37179600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr5:37166400-37176600	Strong transcription	NH-A	brain
33	chr5:37166400-37198400	Weak transcription	Stomach Mucosa	stomach
34	chr5:37166400-37213600	Weak transcription	HepG2	liver
35	chr5:37166600-37197400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr5:37167000-37194800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr5:37167200-37179400	Strong transcription	Fetal Muscle Trunk	muscle
38	chr5:37167200-37181200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr5:37167200-37195000	Strong transcription	Fetal Intestine Large	intestine
40	chr5:37167600-37176600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr5:37167600-37179200	Strong transcription	Left Ventricle	heart
42	chr5:37167600-37179600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr5:37167800-37176600	Strong transcription	HSMMtube	muscle
44	chr5:37168000-37176600	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr5:37168000-37179600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr5:37168200-37177800	Strong transcription	Brain Hippocampus Middle	brain
47	chr5:37168200-37180000	Strong transcription	Osteobl	bone
48	chr5:37168400-37178200	Strong transcription	Brain Anterior Caudate	brain
49	chr5:37168600-37176600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr5:37168600-37179200	Strong transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links