Variant report

Variant	rs73068449
Chromosome Location	chr5:37362690-37362691
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:37361813..37365556-chr5:37369411..37373994,6	K562	blood:
2	chr5:37341337..37344195-chr5:37360002..37362809,2	K562	blood:
3	chr5:37362418..37364207-chr5:37369498..37371536,2	MCF-7	breast:
4	chr5:37358150..37361413-chr5:37362395..37366227,3	K562	blood:

Variant related genes	Relation type
ENSG00000113569	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs16903524	1.00[AMR][1000 genomes]
rs16903527	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16903598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16903600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16903603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16903604	1.00[AMR][1000 genomes]
rs16903613	1.00[AMR][1000 genomes]
rs16903618	1.00[AMR][1000 genomes]
rs34243761	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56725398	1.00[AMR][1000 genomes]
rs57564262	1.00[AMR][1000 genomes]
rs58089157	1.00[AMR][1000 genomes]
rs58132646	1.00[AMR][1000 genomes]
rs59150742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59289853	1.00[AMR][1000 genomes]
rs59775401	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59938294	1.00[AMR][1000 genomes]
rs59956868	1.00[AMR][1000 genomes]
rs60505985	1.00[AMR][1000 genomes]
rs60609972	1.00[AMR][1000 genomes]
rs60854599	1.00[AMR][1000 genomes]
rs60866810	1.00[AMR][1000 genomes]
rs61062002	1.00[AMR][1000 genomes]
rs61235304	1.00[AMR][1000 genomes]
rs61421708	1.00[AMR][1000 genomes]
rs61561054	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61732654	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6864055	1.00[AMR][1000 genomes]
rs6878467	1.00[AMR][1000 genomes]
rs73066405	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73068410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73068415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73068474	1.00[AMR][1000 genomes]
rs73070406	1.00[AMR][1000 genomes]
rs73070409	1.00[AMR][1000 genomes]
rs73070411	1.00[AMR][1000 genomes]
rs73070497	1.00[AMR][1000 genomes]
rs73072214	1.00[AMR][1000 genomes]
rs73072281	1.00[AMR][1000 genomes]
rs73072296	1.00[AMR][1000 genomes]
rs73074108	1.00[AMR][1000 genomes]
rs73074115	1.00[AMR][1000 genomes]
rs73095712	1.00[AMR][1000 genomes]
rs73095713	1.00[AMR][1000 genomes]
rs73095726	1.00[AMR][1000 genomes]
rs73095728	1.00[AMR][1000 genomes]
rs73095735	1.00[AMR][1000 genomes]
rs73095736	1.00[AMR][1000 genomes]
rs73095753	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73095756	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7704088	1.00[AMR][1000 genomes]
rs7710222	1.00[AFR][1000 genomes]
rs7720731	1.00[AMR][1000 genomes]
rs7727395	1.00[AMR][1000 genomes]
rs7727585	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7727710	1.00[AMR][1000 genomes]
rs7728924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:32 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530226	chr5:36906377-37606367	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv534064	chr5:37054962-37586210	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv881511	chr5:37088627-37552852	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv597823	chr5:37111565-37430365	Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
5	nsv1026554	chr5:37112133-37734859	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
6	nsv537726	chr5:37112133-37734859	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
7	nsv1025988	chr5:37115142-37586211	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
8	nsv537727	chr5:37115142-37586211	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
9	nsv530227	chr5:37157106-37571999	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
10	nsv880839	chr5:37173930-37465126	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
11	nsv948741	chr5:37179341-37582164	Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
12	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
13	nsv597824	chr5:37206621-37409579	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
14	nsv597825	chr5:37206621-37430365	Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
15	nsv881512	chr5:37239240-37364693	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
16	nsv880817	chr5:37239240-37465126	Weak transcription Bivalent Enhancer Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
17	nsv881492	chr5:37239240-37543121	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
18	nsv880444	chr5:37239240-37556926	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
19	nsv1015983	chr5:37240827-37666601	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
20	nsv1021284	chr5:37264275-37630188	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
21	nsv1029088	chr5:37285576-37604945	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
22	nsv597844	chr5:37287836-37567851	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
23	nsv881076	chr5:37294473-37479198	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
24	nsv1028058	chr5:37302941-37581735	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
25	nsv537728	chr5:37302941-37581735	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
26	nsv1023871	chr5:37330018-37804744	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
27	nsv537729	chr5:37330018-37804744	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
28	nsv1028054	chr5:37331852-37586211	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
29	nsv537730	chr5:37331852-37586211	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
30	nsv1030797	chr5:37335832-37445040	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
31	nsv980968	chr5:37348697-37363379	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
32	nsv471012	chr5:37349895-37545998	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37289000-37369200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr5:37296400-37365400	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr5:37296400-37369000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:37296800-37364600	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr5:37296800-37364600	Strong transcription	Dnd41	blood
6	chr5:37296800-37365600	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr5:37297000-37364200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr5:37297000-37365400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:37297400-37364600	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr5:37307800-37368600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:37308800-37365400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr5:37311600-37365400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:37311600-37365400	Strong transcription	Fetal Muscle Leg	muscle
14	chr5:37319200-37364600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:37319400-37365400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr5:37323400-37363600	Weak transcription	Stomach Mucosa	stomach
17	chr5:37324400-37365400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr5:37330000-37364200	Strong transcription	Fetal Muscle Trunk	muscle
19	chr5:37334800-37369600	Weak transcription	HSMMtube	muscle
20	chr5:37337400-37370000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr5:37340800-37370200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:37342600-37369000	Weak transcription	Fetal Brain Male	brain
23	chr5:37342800-37369600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr5:37347400-37370000	Weak transcription	Aorta	Aorta
25	chr5:37347800-37369000	Weak transcription	Small Intestine	intestine
26	chr5:37348200-37369400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr5:37348800-37364600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr5:37350400-37365800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr5:37350600-37368800	Strong transcription	Fetal Stomach	stomach
30	chr5:37351400-37368600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr5:37351400-37368800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr5:37351600-37363200	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr5:37351600-37369200	Weak transcription	Fetal Heart	heart
34	chr5:37353000-37363400	Weak transcription	Brain Substantia Nigra	brain
35	chr5:37353000-37363800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr5:37353600-37368600	Weak transcription	Pancreas	Pancrea
37	chr5:37354000-37365400	Strong transcription	Fetal Thymus	thymus
38	chr5:37354800-37369200	Weak transcription	Right Ventricle	heart
39	chr5:37355600-37364400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr5:37357000-37368200	Weak transcription	Psoas Muscle	Psoas
41	chr5:37357000-37369000	Weak transcription	Brain Angular Gyrus	brain
42	chr5:37357000-37370000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr5:37357200-37363200	Weak transcription	Rectal Smooth Muscle	rectum
44	chr5:37357200-37364000	Weak transcription	HUVEC	blood vessel
45	chr5:37357400-37369000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr5:37358200-37363200	Weak transcription	Ovary	ovary
47	chr5:37358200-37363800	Weak transcription	Fetal Kidney	kidney
48	chr5:37358200-37368600	Weak transcription	Gastric	stomach
49	chr5:37358200-37370200	Weak transcription	Esophagus	oesophagus
50	chr5:37358400-37363200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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