Variant report

Variant	rs73066405
Chromosome Location	chr5:37256045-37256046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:37248443..37250196-chr5:37254645..37256658,2	MCF-7	breast:
2	chr5:37248340..37251803-chr5:37254807..37257992,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197603	Chromatin interaction

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs16903524	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16903527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16903598	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16903600	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16903603	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16903604	1.00[AMR][1000 genomes]
rs16903613	1.00[AMR][1000 genomes]
rs16903618	1.00[AMR][1000 genomes]
rs34243761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56725398	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57564262	1.00[AMR][1000 genomes]
rs58089157	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58132646	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59150742	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59775401	1.00[AMR][1000 genomes]
rs59938294	1.00[AMR][1000 genomes]
rs59956868	1.00[AMR][1000 genomes]
rs60290055	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60505985	1.00[AMR][1000 genomes]
rs60570427	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60609972	1.00[AMR][1000 genomes]
rs60866810	1.00[AMR][1000 genomes]
rs61062002	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61235304	1.00[AMR][1000 genomes]
rs61561054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61732654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6863554	1.00[AMR][1000 genomes]
rs6864055	1.00[AMR][1000 genomes]
rs6878467	1.00[AMR][1000 genomes]
rs73068410	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73068415	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73068449	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73068474	1.00[AMR][1000 genomes]
rs73070406	1.00[AMR][1000 genomes]
rs73070409	1.00[AMR][1000 genomes]
rs73070411	1.00[AMR][1000 genomes]
rs73070497	1.00[AMR][1000 genomes]
rs73072214	1.00[AMR][1000 genomes]
rs73072281	1.00[AMR][1000 genomes]
rs73093898	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73095712	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73095713	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73095726	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73095728	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73095735	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73095736	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73095753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73095756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7704088	1.00[AMR][1000 genomes]
rs7710222	0.84[AFR][1000 genomes]
rs7720731	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7727395	1.00[AMR][1000 genomes]
rs7727585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7727710	1.00[AMR][1000 genomes]
rs7728924	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:50 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525478	chr5:36804225-37349895	Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	esv1793961	chr5:36866835-37361728	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv530225	chr5:36886635-37331912	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv1024051	chr5:36899712-37303001	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv537725	chr5:36899712-37303001	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv530226	chr5:36906377-37606367	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
7	nsv534064	chr5:37054962-37586210	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
8	nsv881511	chr5:37088627-37552852	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
9	nsv597823	chr5:37111565-37430365	Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
10	nsv1026554	chr5:37112133-37734859	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
11	nsv537726	chr5:37112133-37734859	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
12	nsv1025988	chr5:37115142-37586211	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
13	nsv537727	chr5:37115142-37586211	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
14	nsv830265	chr5:37152221-37312233	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
15	nsv530227	chr5:37157106-37571999	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
16	nsv880406	chr5:37173930-37345270	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
17	nsv880839	chr5:37173930-37465126	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
18	nsv948741	chr5:37179341-37582164	Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
19	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
20	nsv597824	chr5:37206621-37409579	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
21	nsv597825	chr5:37206621-37430365	Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
22	nsv881512	chr5:37239240-37364693	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
23	nsv880817	chr5:37239240-37465126	Weak transcription Bivalent Enhancer Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
24	nsv881492	chr5:37239240-37543121	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
25	nsv880444	chr5:37239240-37556926	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
26	nsv1015983	chr5:37240827-37666601	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
27	nsv597826	chr5:37250700-37256578	ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
28	esv3517232	chr5:37253945-37259043	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
29	esv3517233	chr5:37253945-37259043	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
30	esv3470438	chr5:37254213-37257994	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
31	esv3470439	chr5:37254506-37257876	ZNF genes & repeats Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
32	esv3470440	chr5:37254506-37257876	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
33	esv13273	chr5:37254693-37256861	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
34	nsv597827	chr5:37254744-37256764	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
35	nsv597828	chr5:37254744-37256849	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
36	nsv597829	chr5:37254744-37262602	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
37	nsv597830	chr5:37254744-37263745	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
38	nsv597831	chr5:37254899-37256271	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
39	nsv597832	chr5:37254899-37256849	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
40	nsv597833	chr5:37255318-37256578	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
41	nsv597834	chr5:37255318-37256849	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
42	nsv597835	chr5:37255427-37256849	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
43	nsv597836	chr5:37255585-37256699	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
44	nsv597837	chr5:37255585-37256849	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
45	nsv597838	chr5:37255585-37274036	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
46	nsv597839	chr5:37255706-37256764	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
47	nsv597840	chr5:37255706-37256849	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
48	nsv597841	chr5:37255822-37256849	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
49	nsv597842	chr5:37255822-37262602	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
50	nsv597843	chr5:37255822-37285576	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37250200-37257200	Weak transcription	Psoas Muscle	Psoas
2	chr5:37250200-37260000	Weak transcription	Brain Anterior Caudate	brain
3	chr5:37250400-37256600	Weak transcription	Colon Smooth Muscle	Colon
4	chr5:37250400-37257400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr5:37250400-37264200	Weak transcription	Brain Substantia Nigra	brain
6	chr5:37254800-37263400	Weak transcription	Hela-S3	cervix
7	chr5:37255000-37260000	Weak transcription	Left Ventricle	heart
8	chr5:37255000-37261800	Weak transcription	Fetal Intestine Small	intestine
9	chr5:37256000-37256400	Enhancers	Cortex derived primary cultured neurospheres	brain

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