Variant report

Variant	rs57668778
Chromosome Location	chr4:26952053-26952054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26857143..26859433-chr4:26950614..26952186,2	K562	blood:

Variant related genes	Relation type
ENSG00000109689	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10028164	1.00[EUR][1000 genomes]
rs10031905	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1035075	1.00[EUR][1000 genomes]
rs1860981	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2192241	1.00[EUR][1000 genomes]
rs2309497	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28489605	1.00[EUR][1000 genomes]
rs4129747	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4140681	1.00[EUR][1000 genomes]
rs4599399	1.00[EUR][1000 genomes]
rs4692016	1.00[EUR][1000 genomes]
rs4692017	1.00[EUR][1000 genomes]
rs4692018	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4692138	1.00[EUR][1000 genomes]
rs55646519	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56001106	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56810203	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57810647	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59530500	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59678983	1.00[EUR][1000 genomes]
rs61084398	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6448490	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6841079	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6858361	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73116642	1.00[EUR][1000 genomes]
rs73116643	1.00[EUR][1000 genomes]
rs73116645	1.00[EUR][1000 genomes]
rs73116652	1.00[EUR][1000 genomes]
rs73116653	1.00[EUR][1000 genomes]
rs73116655	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73116657	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73116660	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73116665	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73116670	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73116672	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73116675	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7670520	1.00[EUR][1000 genomes]
rs7688601	1.00[EUR][1000 genomes]
rs887792	1.00[EUR][1000 genomes]
rs887794	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9790760	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1001306	chr4:26821511-26955344	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv461312	chr4:26844674-27078376	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv593872	chr4:26844674-27078376	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1000568	chr4:26886920-27049554	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1000535	chr4:26944042-26955394	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv1812289	chr4:26945149-26957436	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv1808465	chr4:26945149-26957489	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv593873	chr4:26950265-26957385	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv593874	chr4:26950265-26957436	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv593875	chr4:26950265-26957489	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26911600-26965800	Weak transcription	HMEC	breast
2	chr4:26923200-26965800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:26923200-26977200	Weak transcription	Thymus	Thymus
4	chr4:26923400-26954400	Weak transcription	HSMM	muscle
5	chr4:26923400-26960600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr4:26924400-26955200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr4:26938600-26969000	Weak transcription	Gastric	stomach
8	chr4:26938800-26965600	Weak transcription	NHLF	lung
9	chr4:26939000-26954000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr4:26939200-26969000	Weak transcription	Pancreas	Pancrea
11	chr4:26942000-26961000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr4:26943200-26955000	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr4:26944200-26952800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr4:26944400-26965600	Weak transcription	Brain Anterior Caudate	brain
15	chr4:26945200-26954600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr4:26945200-26956800	Weak transcription	Brain Angular Gyrus	brain
17	chr4:26945400-26954600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr4:26948400-26952200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:26948400-26952200	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr4:26948800-26952800	Strong transcription	Primary B cells from cord blood	blood
21	chr4:26949200-26965600	Weak transcription	NH-A	brain
22	chr4:26949400-26963400	Weak transcription	Lung	lung
23	chr4:26950000-26980200	Weak transcription	Spleen	Spleen
24	chr4:26950200-26954200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr4:26950200-26979400	Weak transcription	Ovary	ovary
26	chr4:26950400-26959600	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr4:26951200-26952400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
28	chr4:26951600-26952600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
29	chr4:26951800-26960200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr4:26952000-26952200	ZNF genes & repeats	Fetal Stomach	stomach
31	chr4:26952000-26952400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr4:26952000-26952400	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
33	chr4:26952000-26952600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
34	chr4:26952000-26952800	ZNF genes & repeats	Fetal Muscle Leg	muscle
35	chr4:26952000-26953600	ZNF genes & repeats	Primary T cells from cord blood	blood

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