Variant report

Variant	rs887794
Chromosome Location	chr4:26964350-26964351
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26963208..26966058-chr4:26966686..26968937,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10028164	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10031905	1.00[EUR][1000 genomes]
rs1035075	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1860981	1.00[EUR][1000 genomes]
rs2192241	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2309497	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28489605	1.00[EUR][1000 genomes]
rs4129747	1.00[ASW][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4140681	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4599399	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4692016	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4692017	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4692018	1.00[ASW][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4692135	0.81[AMR][1000 genomes]
rs4692138	1.00[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55646519	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56001106	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56810203	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57668778	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57810647	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59530500	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59678983	1.00[EUR][1000 genomes]
rs61084398	1.00[EUR][1000 genomes]
rs6448490	1.00[EUR][1000 genomes]
rs6841079	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6858361	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73116642	1.00[EUR][1000 genomes]
rs73116643	1.00[EUR][1000 genomes]
rs73116645	1.00[EUR][1000 genomes]
rs73116652	1.00[EUR][1000 genomes]
rs73116653	1.00[EUR][1000 genomes]
rs73116655	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73116657	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73116660	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73116665	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73116670	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73116672	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73116675	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7670520	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7688601	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs887792	1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9790760	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv461312	chr4:26844674-27078376	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv593872	chr4:26844674-27078376	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1000568	chr4:26886920-27049554	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26911600-26965800	Weak transcription	HMEC	breast
2	chr4:26923200-26965800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:26923200-26977200	Weak transcription	Thymus	Thymus
4	chr4:26938600-26969000	Weak transcription	Gastric	stomach
5	chr4:26938800-26965600	Weak transcription	NHLF	lung
6	chr4:26939200-26969000	Weak transcription	Pancreas	Pancrea
7	chr4:26944400-26965600	Weak transcription	Brain Anterior Caudate	brain
8	chr4:26949200-26965600	Weak transcription	NH-A	brain
9	chr4:26950000-26980200	Weak transcription	Spleen	Spleen
10	chr4:26950200-26979400	Weak transcription	Ovary	ovary
11	chr4:26952600-26965600	Weak transcription	Psoas Muscle	Psoas
12	chr4:26955600-26965600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:26955600-26965600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:26955600-26965600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:26955600-26965600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr4:26955600-26965600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr4:26955600-26965600	Weak transcription	Duodenum Mucosa	Duodenum
18	chr4:26955600-26966400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr4:26956000-26966400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr4:26957400-26964600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr4:26957400-26966600	Weak transcription	Small Intestine	intestine
22	chr4:26958000-26965600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr4:26958600-26965600	Weak transcription	Brain Angular Gyrus	brain
24	chr4:26958600-26965800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr4:26959000-26966400	Weak transcription	Liver	Liver
26	chr4:26959200-26977600	Weak transcription	Fetal Thymus	thymus
27	chr4:26961000-26977200	Weak transcription	Fetal Intestine Small	intestine
28	chr4:26961200-26965600	Weak transcription	HSMM	muscle
29	chr4:26961400-26965600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr4:26961400-26966000	Weak transcription	GM12878-XiMat	blood
31	chr4:26961600-26965600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr4:26961600-26966000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr4:26961600-26967000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr4:26961600-26967400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr4:26961600-26967600	Weak transcription	Dnd41	blood
36	chr4:26961600-26969600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr4:26961600-26973400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr4:26961600-26977200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr4:26961800-26965600	Weak transcription	Brain Hippocampus Middle	brain
40	chr4:26961800-26966000	Weak transcription	Brain Substantia Nigra	brain
41	chr4:26961800-26966400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr4:26961800-26966400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr4:26961800-26966400	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr4:26961800-26966600	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr4:26961800-26967200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr4:26961800-26967400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr4:26961800-26975800	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr4:26961800-26980200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr4:26961800-26994000	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr4:26962000-26975200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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