Variant report

Variant	rs7670520
Chromosome Location	chr4:26977025-26977026
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26977005..26979761-chr4:27016014..27017774,2	MCF-7	breast:
2	chr4:26862490..26864682-chr4:26976587..26979178,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109689	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10028164	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10031905	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1035075	1.00[EUR][1000 genomes]
rs1860981	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2192241	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2309497	1.00[EUR][1000 genomes]
rs28489605	1.00[EUR][1000 genomes]
rs4129747	1.00[EUR][1000 genomes]
rs4140681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4599399	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4692016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4692017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4692018	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4692135	0.93[AMR][1000 genomes]
rs4692138	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55646519	1.00[EUR][1000 genomes]
rs56001106	1.00[EUR][1000 genomes]
rs56810203	1.00[EUR][1000 genomes]
rs57668778	1.00[EUR][1000 genomes]
rs57810647	1.00[EUR][1000 genomes]
rs59530500	1.00[EUR][1000 genomes]
rs59678983	1.00[EUR][1000 genomes]
rs61084398	1.00[EUR][1000 genomes]
rs6448489	0.88[AMR][1000 genomes]
rs6448490	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6841079	1.00[EUR][1000 genomes]
rs6858361	1.00[EUR][1000 genomes]
rs73116642	1.00[EUR][1000 genomes]
rs73116643	1.00[EUR][1000 genomes]
rs73116645	1.00[EUR][1000 genomes]
rs73116652	1.00[EUR][1000 genomes]
rs73116653	1.00[EUR][1000 genomes]
rs73116655	1.00[EUR][1000 genomes]
rs73116657	1.00[EUR][1000 genomes]
rs73116660	1.00[EUR][1000 genomes]
rs73116665	1.00[EUR][1000 genomes]
rs73116670	1.00[EUR][1000 genomes]
rs73116672	1.00[EUR][1000 genomes]
rs73116675	1.00[EUR][1000 genomes]
rs7688601	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs887792	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs887794	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9790760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9994911	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv461312	chr4:26844674-27078376	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv593872	chr4:26844674-27078376	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1000568	chr4:26886920-27049554	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26923200-26977200	Weak transcription	Thymus	Thymus
2	chr4:26950000-26980200	Weak transcription	Spleen	Spleen
3	chr4:26950200-26979400	Weak transcription	Ovary	ovary
4	chr4:26959200-26977600	Weak transcription	Fetal Thymus	thymus
5	chr4:26961000-26977200	Weak transcription	Fetal Intestine Small	intestine
6	chr4:26961600-26977200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr4:26961800-26980200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr4:26961800-26994000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr4:26963600-26994200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr4:26964200-26977200	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr4:26966600-26986400	Weak transcription	HSMM	muscle
12	chr4:26966600-26989000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:26966600-26994600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:26966800-26977200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr4:26966800-26979200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:26966800-26979400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:26966800-26985200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr4:26966800-26986400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr4:26967000-26977200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr4:26967000-26980000	Weak transcription	GM12878-XiMat	blood
21	chr4:26967200-26977200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr4:26967600-26986400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr4:26968000-26977200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr4:26969400-26977200	Weak transcription	Primary B cells from peripheral blood	blood
25	chr4:26969800-26979400	Weak transcription	Pancreas	Pancrea
26	chr4:26969800-26980000	Weak transcription	Primary B cells from cord blood	blood
27	chr4:26974400-26977600	Weak transcription	Fetal Muscle Leg	muscle
28	chr4:26975000-26977600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr4:26975400-26977200	Weak transcription	Fetal Stomach	stomach
30	chr4:26975600-26977200	Weak transcription	Fetal Muscle Trunk	muscle
31	chr4:26975800-26977200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr4:26975800-26979200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr4:26975800-26980400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr4:26975800-27003200	Weak transcription	Aorta	Aorta
35	chr4:26976000-26977200	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr4:26976200-26978600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr4:26976600-26977200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr4:26976600-26978800	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr4:26976800-26977200	Weak transcription	Primary T cells from cord blood	blood

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