Variant report

Variant	rs73116665
Chromosome Location	chr4:26930176-26930177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:26929502..26931950-chr4:26933596..26935947,2	K562	blood:
2	chr4:26929049..26932416-chr4:26937175..26939754,3	K562	blood:
3	chr4:26858456..26860420-chr4:26928261..26931119,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109689	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10028164	1.00[EUR][1000 genomes]
rs10031905	1.00[EUR][1000 genomes]
rs1035075	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1860981	1.00[EUR][1000 genomes]
rs2192241	1.00[EUR][1000 genomes]
rs2309497	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28489605	1.00[EUR][1000 genomes]
rs4129747	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4140681	1.00[EUR][1000 genomes]
rs4599399	1.00[EUR][1000 genomes]
rs4692016	1.00[EUR][1000 genomes]
rs4692017	1.00[EUR][1000 genomes]
rs4692018	1.00[EUR][1000 genomes]
rs4692138	1.00[EUR][1000 genomes]
rs55646519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56001106	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56810203	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57668778	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57810647	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59530500	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59678983	1.00[EUR][1000 genomes]
rs61084398	1.00[EUR][1000 genomes]
rs6448490	1.00[EUR][1000 genomes]
rs6841079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6858361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73116642	1.00[EUR][1000 genomes]
rs73116643	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73116645	1.00[EUR][1000 genomes]
rs73116652	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73116653	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73116655	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73116657	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73116660	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73116670	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73116672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73116675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7670520	1.00[EUR][1000 genomes]
rs7688601	1.00[EUR][1000 genomes]
rs887792	1.00[EUR][1000 genomes]
rs887794	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9790760	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1001306	chr4:26821511-26955344	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv461312	chr4:26844674-27078376	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv593872	chr4:26844674-27078376	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1000568	chr4:26886920-27049554	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3385459	chr4:26926504-26930302	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26907200-26937800	Weak transcription	Stomach Mucosa	stomach
2	chr4:26911600-26965800	Weak transcription	HMEC	breast
3	chr4:26914600-26936800	Weak transcription	Small Intestine	intestine
4	chr4:26914800-26932400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:26914800-26932600	Weak transcription	Spleen	Spleen
6	chr4:26914800-26942200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:26918200-26938400	Weak transcription	Psoas Muscle	Psoas
8	chr4:26918400-26939800	Weak transcription	Fetal Heart	heart
9	chr4:26919600-26932800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:26921800-26932400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr4:26922200-26932400	Weak transcription	Fetal Kidney	kidney
12	chr4:26922600-26932600	Weak transcription	Brain Substantia Nigra	brain
13	chr4:26922800-26941400	Weak transcription	Brain Hippocampus Middle	brain
14	chr4:26923000-26932400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr4:26923000-26940200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr4:26923000-26942400	Weak transcription	Fetal Brain Male	brain
17	chr4:26923000-26942400	Weak transcription	Left Ventricle	heart
18	chr4:26923200-26939400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr4:26923200-26941400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr4:26923200-26942400	Weak transcription	Brain Angular Gyrus	brain
21	chr4:26923200-26965800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr4:26923200-26977200	Weak transcription	Thymus	Thymus
23	chr4:26923400-26954400	Weak transcription	HSMM	muscle
24	chr4:26923400-26960600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr4:26923600-26931200	Weak transcription	Liver	Liver
26	chr4:26923600-26936000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr4:26923800-26931400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr4:26923800-26943800	Weak transcription	Fetal Lung	lung
29	chr4:26924400-26931400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr4:26924400-26932400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr4:26924400-26932600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr4:26924400-26932600	Weak transcription	Brain Cingulate Gyrus	brain
33	chr4:26924400-26936000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr4:26924400-26936200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr4:26924400-26936400	Weak transcription	Primary B cells from cord blood	blood
36	chr4:26924400-26936400	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr4:26924400-26938200	Weak transcription	GM12878-XiMat	blood
38	chr4:26924400-26938400	Weak transcription	Ovary	ovary
39	chr4:26924400-26940200	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr4:26924400-26940600	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr4:26924400-26955200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr4:26924600-26932200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr4:26924600-26932400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr4:26924600-26932600	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr4:26924600-26932600	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr4:26924600-26936800	Weak transcription	Primary B cells from peripheral blood	blood
47	chr4:26924600-26936800	Weak transcription	Primary T cells from cord blood	blood
48	chr4:26924600-26936800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr4:26924600-26938400	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr4:26924600-26938400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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