Variant report

Variant	rs61084398
Chromosome Location	chr4:26883331-26883332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26877548..26879443-chr4:26882952..26885822,2	MCF-7	breast:
2	chr4:26863853..26865538-chr4:26880691..26883360,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10028164	1.00[EUR][1000 genomes]
rs10031905	1.00[EUR][1000 genomes]
rs1035075	1.00[EUR][1000 genomes]
rs1860981	1.00[EUR][1000 genomes]
rs2192241	1.00[EUR][1000 genomes]
rs2309497	1.00[EUR][1000 genomes]
rs28489605	1.00[EUR][1000 genomes]
rs4129747	1.00[EUR][1000 genomes]
rs4140681	1.00[EUR][1000 genomes]
rs4599399	1.00[EUR][1000 genomes]
rs4692016	1.00[EUR][1000 genomes]
rs4692017	1.00[EUR][1000 genomes]
rs4692018	1.00[EUR][1000 genomes]
rs4692138	1.00[EUR][1000 genomes]
rs55646519	1.00[EUR][1000 genomes]
rs56001106	1.00[EUR][1000 genomes]
rs56810203	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57668778	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57810647	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59530500	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59678983	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6448490	1.00[EUR][1000 genomes]
rs6841079	1.00[EUR][1000 genomes]
rs6858361	1.00[EUR][1000 genomes]
rs73116642	1.00[EUR][1000 genomes]
rs73116643	1.00[EUR][1000 genomes]
rs73116645	1.00[EUR][1000 genomes]
rs73116652	1.00[EUR][1000 genomes]
rs73116653	1.00[EUR][1000 genomes]
rs73116655	1.00[EUR][1000 genomes]
rs73116657	1.00[EUR][1000 genomes]
rs73116660	1.00[EUR][1000 genomes]
rs73116665	1.00[EUR][1000 genomes]
rs73116670	1.00[EUR][1000 genomes]
rs73116672	1.00[EUR][1000 genomes]
rs73116675	1.00[EUR][1000 genomes]
rs7670520	1.00[EUR][1000 genomes]
rs7688601	1.00[EUR][1000 genomes]
rs887792	1.00[EUR][1000 genomes]
rs887794	1.00[EUR][1000 genomes]
rs9790760	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1001306	chr4:26821511-26955344	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv461312	chr4:26844674-27078376	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv593872	chr4:26844674-27078376	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26864400-26886600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr4:26864600-26885600	Weak transcription	Thymus	Thymus
3	chr4:26867200-26884200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:26869800-26886000	Weak transcription	Fetal Stomach	stomach
5	chr4:26873000-26886200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr4:26873400-26883600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:26875600-26904600	Weak transcription	Brain Anterior Caudate	brain
8	chr4:26875800-26888200	Weak transcription	Adipose Nuclei	Adipose
9	chr4:26876400-26885600	Weak transcription	Fetal Lung	lung
10	chr4:26878000-26885400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:26878600-26885600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr4:26878600-26885800	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr4:26879200-26885400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr4:26879200-26885400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr4:26880200-26884200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr4:26880200-26885000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr4:26880200-26885000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr4:26880200-26885600	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr4:26880400-26884000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr4:26880600-26884800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr4:26880600-26885600	Weak transcription	Fetal Muscle Leg	muscle
22	chr4:26880600-26902400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr4:26880600-26921600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr4:26880800-26885200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr4:26881400-26885600	Enhancers	Primary B cells from peripheral blood	blood
26	chr4:26881800-26883400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr4:26881800-26884000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr4:26881800-26885200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr4:26881800-26885600	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr4:26881800-26886800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr4:26881800-26896200	Weak transcription	HMEC	breast
32	chr4:26882000-26884200	Weak transcription	Dnd41	blood
33	chr4:26882000-26885000	Weak transcription	Fetal Heart	heart
34	chr4:26882000-26885400	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr4:26882000-26885400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr4:26882000-26885400	Weak transcription	Small Intestine	intestine
37	chr4:26882000-26885800	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr4:26882000-26887800	Weak transcription	Stomach Mucosa	stomach
39	chr4:26882000-26897000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr4:26882200-26884000	Weak transcription	Primary T cells from cord blood	blood
41	chr4:26882200-26889000	Weak transcription	K562	blood
42	chr4:26882600-26883400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr4:26882600-26885800	Enhancers	Primary T cells fromperipheralblood	blood
44	chr4:26882800-26883800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr4:26883000-26884400	Enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr4:26883000-26885200	Enhancers	Primary B cells from cord blood	blood
47	chr4:26883000-26885800	Weak transcription	Brain Substantia Nigra	brain
48	chr4:26883200-26885400	Enhancers	GM12878-XiMat	blood
49	chr4:26883200-26885600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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