Variant report

Variant	rs57721191
Chromosome Location	chr11:105609683-105609684
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55735711	0.85[AMR][1000 genomes]
rs56236586	0.85[AMR][1000 genomes]
rs56739822	0.85[AMR][1000 genomes]
rs59214931	0.85[AMR][1000 genomes]
rs59332515	0.85[AMR][1000 genomes]
rs59575138	0.85[AMR][1000 genomes]
rs60507310	0.85[AMR][1000 genomes]
rs7129285	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832256	chr11:105516593-105689326	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv976503	chr11:105607801-105610804	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105609000-105610200	Enhancers	Brain Germinal Matrix	brain
2	chr11:105609000-105610600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:105609000-105611400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr11:105609200-105610000	Enhancers	Fetal Brain Female	brain
5	chr11:105609200-105610800	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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