Variant report
| Variant | rs59575138 |
|---|---|
| Chromosome Location | chr11:105681644-105681645 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs17104612 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17104633 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1940963 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs55735711 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs55798897 | 0.86[EUR][1000 genomes] |
| rs55855997 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs56020310 | 0.86[EUR][1000 genomes] |
| rs56236586 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs56671885 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs56739822 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs57646416 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs57721191 | 0.85[AMR][1000 genomes] |
| rs59127463 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs59214931 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs59332515 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs59397309 | 0.86[EUR][1000 genomes] |
| rs59852620 | 0.86[EUR][1000 genomes] |
| rs60241016 | 0.86[EUR][1000 genomes] |
| rs60507310 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs60909500 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs60984319 | 0.86[EUR][1000 genomes] |
| rs61601618 | 0.86[EUR][1000 genomes] |
| rs7129285 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs73630113 | 0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832256 | chr11:105516593-105689326 | Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv1829261 | chr11:105614894-105698982 | Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv898357 | chr11:105614894-105709856 | Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv832257 | chr11:105662753-105817576 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 5 | esv1825856 | chr11:105672706-105775768 | Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:105658000-105689400 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
| 2 | chr11:105658200-105693200 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
