Variant report
| Variant | rs55798897 |
|---|---|
| Chromosome Location | chr11:105531460-105531461 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs17104612 | 1.00[EUR][1000 genomes] |
| rs17104633 | 1.00[EUR][1000 genomes] |
| rs1940963 | 1.00[EUR][1000 genomes] |
| rs55735711 | 1.00[EUR][1000 genomes] |
| rs55855997 | 1.00[EUR][1000 genomes] |
| rs56020310 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56236586 | 1.00[EUR][1000 genomes] |
| rs56671885 | 1.00[EUR][1000 genomes] |
| rs56739822 | 1.00[EUR][1000 genomes] |
| rs57646416 | 1.00[EUR][1000 genomes] |
| rs59127463 | 1.00[EUR][1000 genomes] |
| rs59214931 | 1.00[EUR][1000 genomes] |
| rs59332515 | 1.00[EUR][1000 genomes] |
| rs59397309 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59575138 | 0.86[EUR][1000 genomes] |
| rs59852620 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60241016 | 1.00[EUR][1000 genomes] |
| rs60507310 | 1.00[EUR][1000 genomes] |
| rs60909500 | 1.00[EUR][1000 genomes] |
| rs60984319 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61601618 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7129285 | 1.00[EUR][1000 genomes] |
| rs73630113 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1053687 | chr11:105513034-105595722 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv832256 | chr11:105516593-105689326 | Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:105524200-105556800 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
