Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17104612	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17104633	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1940963	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55735711	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55798897	1.00[EUR][1000 genomes]
rs55855997	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56020310	1.00[EUR][1000 genomes]
rs56236586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56671885	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57646416	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57721191	0.85[AMR][1000 genomes]
rs59127463	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59214931	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59332515	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59397309	1.00[EUR][1000 genomes]
rs59575138	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59852620	1.00[EUR][1000 genomes]
rs60241016	1.00[EUR][1000 genomes]
rs60507310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60909500	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60984319	1.00[EUR][1000 genomes]
rs61601618	1.00[EUR][1000 genomes]
rs7129285	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73630113	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832256	chr11:105516593-105689326	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1829261	chr11:105614894-105698982	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv898357	chr11:105614894-105709856	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105658000-105689400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:105658200-105693200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:105659800-105672600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:105669800-105671000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr11:105670000-105670800	Enhancers	Brain Hippocampus Middle	brain
6	chr11:105670000-105671000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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