Variant report

Variant	rs60241016
Chromosome Location	chr11:105692234-105692235
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11226912	0.83[EUR][1000 genomes]
rs17104612	1.00[EUR][1000 genomes]
rs17104633	1.00[EUR][1000 genomes]
rs1940963	1.00[EUR][1000 genomes]
rs55735711	1.00[EUR][1000 genomes]
rs55798897	1.00[EUR][1000 genomes]
rs55855997	1.00[EUR][1000 genomes]
rs56020310	1.00[EUR][1000 genomes]
rs56236586	1.00[EUR][1000 genomes]
rs56671885	1.00[EUR][1000 genomes]
rs56739822	1.00[EUR][1000 genomes]
rs57646416	1.00[EUR][1000 genomes]
rs59127463	1.00[EUR][1000 genomes]
rs59214931	1.00[EUR][1000 genomes]
rs59332515	1.00[EUR][1000 genomes]
rs59397309	1.00[EUR][1000 genomes]
rs59575138	0.86[EUR][1000 genomes]
rs59852620	1.00[EUR][1000 genomes]
rs60507310	1.00[EUR][1000 genomes]
rs60909500	1.00[EUR][1000 genomes]
rs60984319	1.00[EUR][1000 genomes]
rs61601618	1.00[EUR][1000 genomes]
rs7129285	1.00[EUR][1000 genomes]
rs73630113	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829261	chr11:105614894-105698982	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv898357	chr11:105614894-105709856	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv1825856	chr11:105672706-105775768	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105658200-105693200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:105690800-105692800	Enhancers	H1 Cell Line	embryonic stem cell
3	chr11:105690800-105693400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr11:105691000-105693400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr11:105691000-105693800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr11:105691400-105693400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr11:105691400-105702000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:105691800-105693200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:105692000-105692400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr11:105692000-105692800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr11:105692200-105692600	Active TSS	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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