Variant report

Variant	rs57771518
Chromosome Location	chr4:128259839-128259840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11932977	1.00[EUR][1000 genomes]
rs4256233	1.00[EUR][1000 genomes]
rs4264845	1.00[EUR][1000 genomes]
rs4368619	1.00[EUR][1000 genomes]
rs4495050	1.00[EUR][1000 genomes]
rs4833375	1.00[EUR][1000 genomes]
rs56973979	1.00[EUR][1000 genomes]
rs57849919	1.00[EUR][1000 genomes]
rs58161517	1.00[EUR][1000 genomes]
rs58426264	1.00[EUR][1000 genomes]
rs58500747	1.00[EUR][1000 genomes]
rs58620843	1.00[EUR][1000 genomes]
rs58881560	1.00[EUR][1000 genomes]
rs59433376	1.00[EUR][1000 genomes]
rs59613428	1.00[EUR][1000 genomes]
rs60082082	1.00[EUR][1000 genomes]
rs60263978	1.00[EUR][1000 genomes]
rs60860464	1.00[EUR][1000 genomes]
rs6823062	1.00[EUR][1000 genomes]
rs6824490	1.00[EUR][1000 genomes]
rs6825858	1.00[EUR][1000 genomes]
rs6833784	1.00[EUR][1000 genomes]
rs6850339	1.00[EUR][1000 genomes]
rs6853384	1.00[EUR][1000 genomes]
rs72916421	1.00[EUR][1000 genomes]
rs72916449	1.00[EUR][1000 genomes]
rs72925395	1.00[EUR][1000 genomes]
rs72927205	1.00[EUR][1000 genomes]
rs72927207	1.00[EUR][1000 genomes]
rs72927209	1.00[EUR][1000 genomes]
rs72927220	1.00[EUR][1000 genomes]
rs72927222	1.00[EUR][1000 genomes]
rs72927226	1.00[EUR][1000 genomes]
rs72927229	1.00[EUR][1000 genomes]
rs72927267	1.00[EUR][1000 genomes]
rs72933462	1.00[EUR][1000 genomes]
rs7681026	1.00[EUR][1000 genomes]
rs7689510	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031024	chr4:128152969-128264539	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv879915	chr4:128167093-129150590	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv1030334	chr4:128177890-128333424	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1025205	chr4:128182107-128336881	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128259400-128260200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links