Variant report

Variant	rs56973979
Chromosome Location	chr4:128155034-128155035
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10518520	1.00[AFR][1000 genomes]
rs11932977	1.00[EUR][1000 genomes]
rs4264845	1.00[EUR][1000 genomes]
rs4368619	1.00[EUR][1000 genomes]
rs4495050	1.00[EUR][1000 genomes]
rs4833375	1.00[EUR][1000 genomes]
rs56786523	1.00[AFR][1000 genomes]
rs57771518	1.00[EUR][1000 genomes]
rs57849919	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58161517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58426264	1.00[EUR][1000 genomes]
rs58881560	1.00[EUR][1000 genomes]
rs59343472	1.00[EUR][1000 genomes]
rs59433376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59613428	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60860464	1.00[EUR][1000 genomes]
rs6823062	1.00[EUR][1000 genomes]
rs6824490	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6825858	1.00[EUR][1000 genomes]
rs6833784	1.00[EUR][1000 genomes]
rs6853384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72925395	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72927205	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72927207	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72927209	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72927220	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72927222	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72927226	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72927229	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72927254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72927267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7681026	1.00[EUR][1000 genomes]
rs7689510	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031024	chr4:128152969-128264539	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128151600-128160400	Weak transcription	Fetal Stomach	stomach
2	chr4:128152200-128157800	Weak transcription	Fetal Lung	lung
3	chr4:128154800-128155400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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