Variant report
| Variant | rs58881560 |
|---|---|
| Chromosome Location | chr4:128204858-128204859 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs11932977 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4264845 | 1.00[EUR][1000 genomes] |
| rs4368619 | 1.00[EUR][1000 genomes] |
| rs4495050 | 1.00[EUR][1000 genomes] |
| rs4833375 | 1.00[EUR][1000 genomes] |
| rs56973979 | 1.00[EUR][1000 genomes] |
| rs57771518 | 1.00[EUR][1000 genomes] |
| rs57849919 | 1.00[EUR][1000 genomes] |
| rs58161517 | 1.00[EUR][1000 genomes] |
| rs58426264 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59433376 | 1.00[EUR][1000 genomes] |
| rs59613428 | 1.00[EUR][1000 genomes] |
| rs60860464 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6823062 | 1.00[EUR][1000 genomes] |
| rs6824490 | 1.00[EUR][1000 genomes] |
| rs6825858 | 1.00[EUR][1000 genomes] |
| rs6833784 | 1.00[EUR][1000 genomes] |
| rs6853384 | 1.00[EUR][1000 genomes] |
| rs72925395 | 1.00[EUR][1000 genomes] |
| rs72927205 | 1.00[EUR][1000 genomes] |
| rs72927207 | 1.00[EUR][1000 genomes] |
| rs72927209 | 1.00[EUR][1000 genomes] |
| rs72927220 | 1.00[EUR][1000 genomes] |
| rs72927222 | 1.00[EUR][1000 genomes] |
| rs72927226 | 1.00[EUR][1000 genomes] |
| rs72927229 | 1.00[EUR][1000 genomes] |
| rs72927267 | 1.00[EUR][1000 genomes] |
| rs72933462 | 1.00[EUR][1000 genomes] |
| rs7681026 | 1.00[EUR][1000 genomes] |
| rs7689510 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1031024 | chr4:128152969-128264539 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv879915 | chr4:128167093-129150590 | Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 48 gene(s) | inside rSNPs | diseases |
| 3 | nsv1030334 | chr4:128177890-128333424 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1025205 | chr4:128182107-128336881 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:128204800-128205400 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 2 | chr4:128204800-128206000 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
