Variant report

Variant	rs57799611
Chromosome Location	chr2:20284390-20284391
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11893882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11895193	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11900871	0.90[EUR][1000 genomes]
rs11901827	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11903770	0.90[EUR][1000 genomes]
rs57316936	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58038588	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59086150	0.85[EUR][1000 genomes]
rs59304962	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223856	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223861	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223882	0.90[EUR][1000 genomes]
rs73225754	0.90[EUR][1000 genomes]
rs73921910	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20280800-20291000	Weak transcription	A549	lung
2	chr2:20281200-20291200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:20282000-20288600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:20282200-20285400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:20282200-20286000	Weak transcription	HSMMtube	muscle
6	chr2:20282200-20288400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:20282200-20289000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr2:20282200-20289200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:20282200-20289600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:20282400-20290000	Weak transcription	Fetal Muscle Leg	muscle
11	chr2:20282400-20290400	Weak transcription	Placenta	Placenta
12	chr2:20282800-20290600	Weak transcription	Hela-S3	cervix
13	chr2:20283800-20285200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr2:20283800-20286200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr2:20284200-20285200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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