Variant report

Variant	rs58038588
Chromosome Location	chr2:20271722-20271723
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:26)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:26 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:11671059..11672742-chr2:20270351..20272377,2	MCF-7	breast:
2	chr2:20155493..20156202-chr2:20271155..20271939,2	MCF-7	breast:
3	chr2:20263567..20266524-chr2:20270563..20273787,4	K562	blood:
4	chr2:20188473..20190343-chr2:20270622..20272132,2	MCF-7	breast:
5	chr2:20250882..20251588-chr2:20271269..20271930,3	MCF-7	breast:
6	chr2:20271098..20272306-chr2:20313307..20314343,4	MCF-7	breast:
7	chr2:20098547..20100110-chr2:20271638..20273548,2	MCF-7	breast:
8	chr2:20269147..20275842-chr2:20291951..20298996,12	MCF-7	breast:
9	chr2:20155433..20155961-chr2:20271519..20272055,2	MCF-7	breast:
10	chr2:20271401..20271935-chr2:20294339..20294859,2	MCF-7	breast:
11	chr2:20225238..20227093-chr2:20270097..20272850,2	MCF-7	breast:
12	chr2:20211201..20213759-chr2:20270532..20272614,4	MCF-7	breast:
13	chr2:20155184..20157603-chr2:20271244..20273099,3	MCF-7	breast:
14	chr2:20249788..20257046-chr2:20268868..20274735,23	MCF-7	breast:
15	chr2:20271313..20272085-chr2:20313545..20314285,3	MCF-7	breast:
16	chr2:20262539..20265067-chr2:20270708..20273020,3	K562	blood:
17	chr19:14629156..14629681-chr2:20271715..20272537,2	Hela-S3	cervix:
18	chr2:20210963..20214277-chr2:20270799..20274323,4	MCF-7	breast:
19	chr2:20269058..20271837-chr2:20423527..20425315,3	MCF-7	breast:
20	chr2:20270622..20273512-chr2:20307983..20310075,2	MCF-7	breast:
21	chr2:20225520..20228752-chr2:20271563..20273448,3	MCF-7	breast:
22	chr2:20270221..20272820-chr2:20277699..20279389,2	K562	blood:
23	chr2:20271585..20273476-chr2:20412468..20414471,2	MCF-7	breast:
24	chr2:20269865..20272049-chr2:20300977..20303518,3	MCF-7	breast:
25	chr2:20155581..20156178-chr2:20270905..20271899,2	MCF-7	breast:
26	chr2:20271098..20271980-chr2:20313360..20314366,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000227210	Chromatin interaction
ENSG00000132031	Chromatin interaction
ENSG00000115884	Chromatin interaction
ENSG00000223734	Chromatin interaction
ENSG00000068697	Chromatin interaction
ENSG00000118965	Chromatin interaction
ENSG00000132002	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11893882	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11895193	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11900871	0.86[EUR][1000 genomes]
rs11903770	0.86[EUR][1000 genomes]
rs57316936	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57799611	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59086150	0.81[EUR][1000 genomes]
rs59304962	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73223856	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73223861	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73223882	0.86[EUR][1000 genomes]
rs73225754	0.86[EUR][1000 genomes]
rs73921910	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20266600-20272400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr2:20266600-20273000	Weak transcription	Psoas Muscle	Psoas
3	chr2:20267200-20275000	Enhancers	Placenta	Placenta
4	chr2:20269800-20272600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:20270000-20273200	Enhancers	HMEC	breast
6	chr2:20270000-20273600	Enhancers	Placenta Amnion	Placenta Amnion
7	chr2:20270000-20275200	Enhancers	Fetal Muscle Leg	muscle
8	chr2:20270200-20271800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:20270200-20271800	Enhancers	Fetal Muscle Trunk	muscle
10	chr2:20270400-20271800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:20270600-20274000	Enhancers	Fetal Heart	heart
12	chr2:20270800-20272200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr2:20270800-20274000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr2:20271000-20271800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr2:20271000-20271800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr2:20271000-20271800	Enhancers	Fetal Lung	lung
17	chr2:20271000-20272000	Flanking Active TSS	NHEK	skin
18	chr2:20271000-20272200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr2:20271000-20272400	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr2:20271000-20272400	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr2:20271000-20272400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr2:20271000-20272400	Flanking Active TSS	A549	lung
23	chr2:20271000-20272400	Flanking Active TSS	Hela-S3	cervix
24	chr2:20271000-20272400	Flanking Active TSS	HepG2	liver
25	chr2:20271000-20272400	Flanking Active TSS	NHDF-Ad	bronchial
26	chr2:20271000-20273000	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr2:20271000-20273000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr2:20271000-20275000	Enhancers	Pancreas	Pancrea
29	chr2:20271200-20271800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr2:20271200-20271800	Enhancers	Brain Angular Gyrus	brain
31	chr2:20271200-20271800	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr2:20271200-20272000	Enhancers	H1 Cell Line	embryonic stem cell
33	chr2:20271200-20272000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr2:20271200-20272000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr2:20271200-20272000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr2:20271200-20272000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr2:20271200-20272000	Enhancers	Brain Cingulate Gyrus	brain
38	chr2:20271200-20272000	Enhancers	Esophagus	oesophagus
39	chr2:20271200-20272000	Enhancers	Fetal Intestine Small	intestine
40	chr2:20271200-20272000	Enhancers	Right Atrium	heart
41	chr2:20271200-20272000	Enhancers	Spleen	Spleen
42	chr2:20271200-20272000	Enhancers	K562	blood
43	chr2:20271200-20272200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr2:20271200-20272200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr2:20271200-20272200	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr2:20271200-20272200	Enhancers	Colonic Mucosa	Colon
47	chr2:20271200-20272200	Enhancers	Right Ventricle	heart
48	chr2:20271200-20272200	Flanking Active TSS	NHLF	lung
49	chr2:20271200-20272200	Flanking Active TSS	Osteobl	bone
50	chr2:20271200-20272400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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