Variant report

Variant	rs73223861
Chromosome Location	chr2:20291356-20291357
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:20268478..20271036-chr2:20289525..20291447,2	MCF-7	breast:
2	chr2:20209743..20212701-chr2:20291274..20294214,2	MCF-7	breast:
3	chr2:20248110..20258329-chr2:20290320..20297278,22	MCF-7	breast:
4	chr2:20285871..20288708-chr2:20290874..20293778,2	MCF-7	breast:
5	chr2:20289699..20292359-chr2:20294103..20297412,3	MCF-7	breast:
6	chr2:20276734..20283198-chr2:20287354..20293786,7	MCF-7	breast:
7	chr2:20263940..20267235-chr2:20290862..20294236,4	MCF-7	breast:
8	chr2:20271820..20275999-chr2:20291191..20294413,6	MCF-7	breast:
9	chr2:20247984..20253637-chr2:20287496..20297716,23	MCF-7	breast:
10	chr2:20286111..20289844-chr2:20290692..20292976,3	MCF-7	breast:
11	chr2:20277155..20282170-chr2:20290246..20293600,5	MCF-7	breast:
12	chr2:20290689..20292864-chr2:20300791..20304475,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000068697	Chromatin interaction
ENSG00000132031	Chromatin interaction
ENSG00000223734	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11893882	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11895193	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11900871	0.90[EUR][1000 genomes]
rs11901827	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11903770	0.90[EUR][1000 genomes]
rs57316936	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57799611	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58038588	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59086150	0.85[EUR][1000 genomes]
rs59304962	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223856	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223882	0.90[EUR][1000 genomes]
rs73225754	0.90[EUR][1000 genomes]
rs73921910	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20288800-20291400	Weak transcription	Brain Anterior Caudate	brain
2	chr2:20288800-20293200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:20288800-20293200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr2:20289200-20293200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr2:20289600-20291400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr2:20289800-20293400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr2:20290000-20291400	Enhancers	Fetal Muscle Trunk	muscle
8	chr2:20290000-20291800	Enhancers	Fetal Muscle Leg	muscle
9	chr2:20290000-20291800	Enhancers	Ovary	ovary
10	chr2:20290000-20293000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr2:20290000-20294400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr2:20290200-20291400	Weak transcription	Psoas Muscle	Psoas
13	chr2:20290400-20294000	Enhancers	Placenta	Placenta
14	chr2:20290400-20295400	Enhancers	HMEC	breast
15	chr2:20290600-20291400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr2:20290600-20292400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr2:20290600-20293600	Enhancers	Adipose Nuclei	Adipose
18	chr2:20290600-20294000	Enhancers	Fetal Heart	heart
19	chr2:20290600-20294400	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr2:20290800-20291400	Enhancers	Fetal Intestine Small	intestine
21	chr2:20290800-20291400	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr2:20290800-20291600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr2:20290800-20291600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
24	chr2:20290800-20291600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
25	chr2:20290800-20291600	Flanking Active TSS	HSMM	muscle
26	chr2:20290800-20291600	Flanking Active TSS	K562	blood
27	chr2:20290800-20291800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr2:20290800-20291800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr2:20290800-20291800	Enhancers	Fetal Kidney	kidney
30	chr2:20290800-20291800	Enhancers	Fetal Lung	lung
31	chr2:20290800-20291800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
32	chr2:20290800-20291800	Flanking Active TSS	Osteobl	bone
33	chr2:20290800-20292000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr2:20290800-20292000	Flanking Active TSS	NHDF-Ad	bronchial
35	chr2:20290800-20292200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr2:20290800-20292200	Enhancers	Left Ventricle	heart
37	chr2:20290800-20292200	Enhancers	Rectal Smooth Muscle	rectum
38	chr2:20290800-20294200	Enhancers	Esophagus	oesophagus
39	chr2:20290800-20294200	Enhancers	Fetal Stomach	stomach
40	chr2:20290800-20294400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr2:20290800-20294400	Enhancers	NH-A	brain
42	chr2:20290800-20295200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr2:20291000-20291400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr2:20291000-20291400	Enhancers	Fetal Thymus	thymus
45	chr2:20291000-20291600	Flanking Active TSS	NHLF	lung
46	chr2:20291000-20291800	Flanking Active TSS	A549	lung
47	chr2:20291000-20291800	Flanking Active TSS	NHEK	skin
48	chr2:20291000-20292000	Enhancers	Fetal Intestine Large	intestine
49	chr2:20291000-20292200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr2:20291000-20292400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links