Variant report

Variant	rs59304962
Chromosome Location	chr2:20295482-20295483
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:20210274..20217508-chr2:20292118..20299922,13	MCF-7	breast:
2	chr2:20269147..20275842-chr2:20291951..20298996,12	MCF-7	breast:
3	chr2:20248110..20258329-chr2:20290320..20297278,22	MCF-7	breast:
4	chr2:20289699..20292359-chr2:20294103..20297412,3	MCF-7	breast:
5	chr2:20187273..20189318-chr2:20295101..20297253,2	MCF-7	breast:
6	chr2:20239345..20241750-chr2:20293079..20295990,2	K562	blood:
7	chr2:20247984..20253637-chr2:20287496..20297716,23	MCF-7	breast:
8	chr2:20295420..20298254-chr2:20423828..20425433,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000223734	Chromatin interaction
ENSG00000115884	Chromatin interaction
ENSG00000068697	Chromatin interaction
ENSG00000132031	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11893882	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11895193	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11900871	0.90[EUR][1000 genomes]
rs11901827	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11903770	0.90[EUR][1000 genomes]
rs57316936	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57799611	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58038588	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59086150	0.85[EUR][1000 genomes]
rs73223856	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223861	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223882	0.90[EUR][1000 genomes]
rs73225754	0.90[EUR][1000 genomes]
rs73921910	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20291000-20300000	Weak transcription	Right Atrium	heart
2	chr2:20291600-20295800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:20291600-20297800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:20292000-20300400	Weak transcription	HUVEC	blood vessel
5	chr2:20293000-20295600	Enhancers	Liver	Liver
6	chr2:20293600-20304200	Weak transcription	Stomach Mucosa	stomach
7	chr2:20294000-20297600	Weak transcription	Ovary	ovary
8	chr2:20294000-20297800	Weak transcription	Placenta	Placenta
9	chr2:20294000-20304400	Weak transcription	Pancreas	Pancrea
10	chr2:20294200-20297600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr2:20294200-20297600	Weak transcription	Esophagus	oesophagus
12	chr2:20294200-20297600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr2:20294200-20297600	Weak transcription	Hela-S3	cervix
14	chr2:20294200-20297600	Weak transcription	HSMM	muscle
15	chr2:20294200-20297600	Weak transcription	NHDF-Ad	bronchial
16	chr2:20294200-20297800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr2:20294400-20296200	Enhancers	HepG2	liver
18	chr2:20294400-20297400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr2:20294400-20297400	Weak transcription	HSMMtube	muscle
20	chr2:20294400-20297600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr2:20294400-20297600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr2:20294400-20297600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr2:20294400-20297600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr2:20294400-20297800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr2:20294400-20297800	Weak transcription	NH-A	brain
26	chr2:20294400-20300200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr2:20294600-20297600	Weak transcription	Fetal Muscle Leg	muscle
28	chr2:20294800-20297600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr2:20295200-20297600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr2:20295200-20297600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr2:20295200-20297600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr2:20295200-20297600	Weak transcription	NHLF	lung
33	chr2:20295200-20297800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr2:20295200-20297800	Weak transcription	NHEK	skin
35	chr2:20295400-20297600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr2:20295400-20297600	Weak transcription	HMEC	breast

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