Variant report

Variant	rs73223856
Chromosome Location	chr2:20288218-20288219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:20286111..20289844-chr2:20290692..20292976,3	MCF-7	breast:
2	chr2:20285871..20288708-chr2:20290874..20293778,2	MCF-7	breast:
3	chr2:20250052..20253653-chr2:20284923..20290028,5	MCF-7	breast:
4	chr2:20287087..20289341-chr2:20424878..20426458,2	K562	blood:
5	chr2:20276734..20283198-chr2:20287354..20293786,7	MCF-7	breast:
6	chr2:20284419..20286045-chr2:20286888..20289126,2	MCF-7	breast:
7	chr2:20287240..20289975-chr2:20292126..20294060,2	K562	blood:
8	chr2:20247984..20253637-chr2:20287496..20297716,23	MCF-7	breast:
9	chr2:20278085..20279898-chr2:20286384..20289242,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000223734	Chromatin interaction
ENSG00000115884	Chromatin interaction
ENSG00000068697	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11893882	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11895193	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11900871	0.90[EUR][1000 genomes]
rs11901827	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11903770	0.90[EUR][1000 genomes]
rs57316936	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57799611	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58038588	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59086150	0.85[EUR][1000 genomes]
rs59304962	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223861	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223882	0.90[EUR][1000 genomes]
rs73225754	0.90[EUR][1000 genomes]
rs73921910	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20280800-20291000	Weak transcription	A549	lung
2	chr2:20281200-20291200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:20282000-20288600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:20282200-20288400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:20282200-20289000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:20282200-20289200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:20282200-20289600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:20282400-20290000	Weak transcription	Fetal Muscle Leg	muscle
9	chr2:20282400-20290400	Weak transcription	Placenta	Placenta
10	chr2:20282800-20290600	Weak transcription	Hela-S3	cervix
11	chr2:20286200-20288600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr2:20286200-20290400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr2:20286600-20290400	Weak transcription	HSMMtube	muscle
14	chr2:20286800-20290400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr2:20288000-20288800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr2:20288000-20288800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
17	chr2:20288000-20290200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr2:20288200-20288600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr2:20288200-20288600	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr2:20288200-20288800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr2:20288200-20288800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr2:20288200-20288800	Enhancers	Brain Anterior Caudate	brain
23	chr2:20288200-20289200	Enhancers	HepG2	liver

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