Variant report

Variant	rs57805974
Chromosome Location	chr1:197855078-197855079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs55828314	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55873850	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57221255	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57319710	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58603417	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58959432	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59396394	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59498839	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60625077	1.00[AMR][1000 genomes]
rs60873643	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60890417	1.00[AMR][1000 genomes]
rs61374501	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134509	1.00[AMR][1000 genomes]
rs74134865	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134866	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134867	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134869	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134870	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134873	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134874	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134877	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134878	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74137407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74137409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999662	chr1:197821769-197892803	Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
2	esv2762214	chr1:197821769-197897496	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
3	nsv1004130	chr1:197822757-197879728	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197852200-197855200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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