Variant report

Variant	rs61374501
Chromosome Location	chr1:197808692-197808693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:197806907..197812092-chr1:197812928..197815957,4	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs16841857	1.00[AMR][1000 genomes]
rs55828314	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55873850	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57221255	1.00[AMR][1000 genomes]
rs57319710	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57805974	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58603417	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58666162	1.00[AMR][1000 genomes]
rs58959432	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59214900	1.00[AMR][1000 genomes]
rs59396394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59498839	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60625077	1.00[AMR][1000 genomes]
rs60873643	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60890417	1.00[AMR][1000 genomes]
rs74134509	1.00[AMR][1000 genomes]
rs74134857	1.00[AMR][1000 genomes]
rs74134858	1.00[AMR][1000 genomes]
rs74134859	1.00[AMR][1000 genomes]
rs74134862	1.00[AMR][1000 genomes]
rs74134865	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134866	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134867	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134869	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134870	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134873	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134874	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134877	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134878	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74137407	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74137409	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009697	chr1:197804294-197825037	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197806800-197809000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:197807200-197808800	Enhancers	NHEK	skin
3	chr1:197808000-197810400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:197808000-197814400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:197808400-197810600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:197808400-197810800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:197808600-197810600	Weak transcription	NHDF-Ad	bronchial
8	chr1:197808600-197810600	Weak transcription	Osteobl	bone
9	chr1:197808600-197811200	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr1:197808600-197811200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr1:197808600-197811200	Weak transcription	Monocytes-CD14+_RO01746	blood

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