Variant report

Variant	rs74134878
Chromosome Location	chr1:197782940-197782941
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:197782801..197785404-chr1:197789590..197791737,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs16841857	1.00[AMR][1000 genomes]
rs55828314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55873850	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57221255	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57319710	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57805974	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58603417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58666162	1.00[AMR][1000 genomes]
rs58959432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59214900	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59396394	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59498839	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60625077	1.00[AMR][1000 genomes]
rs60873643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60890417	1.00[AMR][1000 genomes]
rs61374501	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134509	1.00[AMR][1000 genomes]
rs74134849	1.00[AMR][1000 genomes]
rs74134857	1.00[AMR][1000 genomes]
rs74134858	1.00[AMR][1000 genomes]
rs74134859	1.00[AMR][1000 genomes]
rs74134862	1.00[AMR][1000 genomes]
rs74134865	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134866	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134868	0.82[AFR][1000 genomes]
rs74134869	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134870	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74137407	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74137409	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197771600-197784000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:197776600-197785400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr1:197778800-197783800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:197780200-197783000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr1:197782600-197783000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr1:197782600-197783000	Enhancers	Fetal Heart	heart
7	chr1:197782600-197783400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr1:197782600-197783400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr1:197782600-197785600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:197782800-197783000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr1:197782800-197783000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr1:197782800-197783000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr1:197782800-197783200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr1:197782800-197785200	Enhancers	H1 Cell Line	embryonic stem cell

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