Variant report

Variant	rs74134509
Chromosome Location	chr1:197873409-197873410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs55828314	1.00[AMR][1000 genomes]
rs55873850	1.00[AMR][1000 genomes]
rs57221255	1.00[AMR][1000 genomes]
rs57319710	1.00[AMR][1000 genomes]
rs57805974	1.00[AMR][1000 genomes]
rs58603417	1.00[AMR][1000 genomes]
rs58959432	1.00[AMR][1000 genomes]
rs59396394	1.00[AMR][1000 genomes]
rs59498839	1.00[AMR][1000 genomes]
rs60873643	1.00[AMR][1000 genomes]
rs60890417	1.00[AMR][1000 genomes]
rs61374501	1.00[AMR][1000 genomes]
rs74134865	1.00[AMR][1000 genomes]
rs74134866	1.00[AMR][1000 genomes]
rs74134867	1.00[AMR][1000 genomes]
rs74134869	1.00[AMR][1000 genomes]
rs74134870	1.00[AMR][1000 genomes]
rs74134873	1.00[AMR][1000 genomes]
rs74134874	1.00[AMR][1000 genomes]
rs74134877	1.00[AMR][1000 genomes]
rs74134878	1.00[AMR][1000 genomes]
rs74137407	1.00[AMR][1000 genomes]
rs74137409	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999662	chr1:197821769-197892803	Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
2	esv2762214	chr1:197821769-197897496	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
3	nsv1004130	chr1:197822757-197879728	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197872400-197879400	Weak transcription	Pancreas	Pancrea
2	chr1:197872600-197873800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr1:197872600-197874000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
4	chr1:197872600-197877000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:197872800-197874400	Weak transcription	Liver	Liver
6	chr1:197873000-197874800	Weak transcription	HepG2	liver
7	chr1:197873200-197873600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
8	chr1:197873400-197873600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:197873400-197873600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:197873400-197877200	Weak transcription	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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