Variant report
| Variant | rs74137409 |
|---|---|
| Chromosome Location | chr1:197858765-197858766 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:197857378..197860156-chr1:197868742..197873458,6 | MCF-7 | breast: | |
| 2 | chr1:197857645..197862735-chr1:197869365..197873854,5 | K562 | blood: | |
| 3 | chr1:197858699..197860624-chr1:197865430..197867942,2 | K562 | blood: | |
| 4 | chr1:197858722..197861449-chr1:197862605..197866101,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000203724 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs55828314 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs55873850 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57221255 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57319710 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57805974 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58603417 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58959432 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59396394 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59498839 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60625077 | 1.00[AMR][1000 genomes] |
| rs60873643 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60890417 | 1.00[AMR][1000 genomes] |
| rs61374501 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74134509 | 1.00[AMR][1000 genomes] |
| rs74134865 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74134866 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74134867 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74134869 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74134870 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74134873 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74134874 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74134877 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74134878 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74137407 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999662 | chr1:197821769-197892803 | Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 14 gene(s) | inside rSNPs | diseases |
| 2 | esv2762214 | chr1:197821769-197897496 | Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive region | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv1004130 | chr1:197822757-197879728 | Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 13 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
