Variant report

Variant	rs578096
Chromosome Location	chr1:71394683-71394684
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10736414	0.84[AMR][1000 genomes]
rs10789314	0.81[AMR][1000 genomes]
rs12119848	0.82[MEX][hapmap]
rs1474663	0.82[MEX][hapmap]
rs2206344	0.82[MEX][hapmap]
rs2744902	0.82[MEX][hapmap]
rs2744908	0.82[MEX][hapmap]
rs2744918	0.82[MEX][hapmap]
rs493489	0.80[CEU][hapmap];0.89[AMR][1000 genomes]
rs496216	0.80[CEU][hapmap];0.89[AMR][1000 genomes]
rs508513	0.84[AMR][1000 genomes]
rs510414	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs532693	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs571705	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs573688	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs579558	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes]
rs584532	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs600364	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61777126	0.81[AMR][1000 genomes]
rs626398	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs645618	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs651265	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs653699	0.84[AMR][1000 genomes]
rs657265	0.89[AMR][1000 genomes]
rs847704	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs847705	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs847734	1.00[CHB][hapmap]
rs847735	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845198	chr1:71274759-71514969	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830148	chr1:71310366-71483932	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv461840	chr1:71364105-71468493	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv546471	chr1:71364105-71468493	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1002663	chr1:71372715-71465508	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv534987	chr1:71372715-71465508	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv871313	chr1:71391646-71489438	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71394400-71397200	Weak transcription	Pancreas	Pancrea
2	chr1:71394600-71395200	Enhancers	Dnd41	blood

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