Variant report

Variant	rs12119848
Chromosome Location	chr1:71554931-71554932
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1005748	0.97[AMR][1000 genomes]
rs1005749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1008484	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10736414	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10789314	1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10889906	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10889907	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12122320	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12126880	0.84[EUR][1000 genomes]
rs12131077	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12131515	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12142055	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145536	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1474663	0.91[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17542551	0.81[CEU][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1983587	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2050065	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2206344	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2244018	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2247098	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2421732	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2744897	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2744898	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2744899	0.84[AMR][1000 genomes]
rs2744900	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2744902	0.81[CEU][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2744905	0.81[CEU][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2744906	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2744907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2744908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2744916	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2744918	0.91[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2817857	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2817860	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3000466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs479934	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs481940	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs493489	0.81[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs496216	0.81[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs508513	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs510414	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[MEX][hapmap];0.83[EUR][1000 genomes]
rs532693	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs578096	0.82[MEX][hapmap]
rs579558	0.81[CEU][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes]
rs584532	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61777272	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61777274	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61778911	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61778912	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6424415	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs647921	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs651265	0.81[CEU][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes]
rs653699	0.80[CEU][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs657265	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6670515	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6679003	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6690000	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72671088	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72671095	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs726764	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7529930	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs847704	0.81[CEU][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes]
rs847705	0.84[EUR][1000 genomes]
rs847735	0.83[AMR][1000 genomes]
rs880099	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9970600	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9970739	1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71547600-71555200	Weak transcription	Lung	lung
2	chr1:71547600-71555800	Weak transcription	NHLF	lung
3	chr1:71549600-71555200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:71552000-71555200	Weak transcription	NH-A	brain
5	chr1:71552000-71555600	Weak transcription	HSMMtube	muscle
6	chr1:71552400-71555200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:71552600-71556000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:71552800-71555600	Weak transcription	HSMM	muscle
9	chr1:71553000-71555000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr1:71553800-71555600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:71554000-71555000	Enhancers	Fetal Lung	lung
12	chr1:71554200-71555400	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr1:71554400-71555200	Enhancers	Fetal Intestine Large	intestine
14	chr1:71554400-71555400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr1:71554600-71555000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:71554600-71555200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:71554600-71555400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:71554600-71556600	Enhancers	NHDF-Ad	bronchial
19	chr1:71554800-71555200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
20	chr1:71554800-71555800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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