Variant report

Variant	rs72671095
Chromosome Location	chr1:71555884-71555885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr1:71555615-71555977	MCF10A-Er-Src	breast:	n/a	chr1:71555800-71555809 chr1:71555798-71555809
2	FOS	chr1:71555647-71555980	MCF10A-Er-Src	breast:	n/a	chr1:71555800-71555809 chr1:71555798-71555809
3	FOS	chr1:71555593-71556045	HUVEC	blood vessel:	n/a	chr1:71555800-71555809 chr1:71555798-71555809
4	FOS	chr1:71555615-71555980	MCF10A-Er-Src	breast:	n/a	chr1:71555800-71555809 chr1:71555798-71555809
5	FOSL2	chr1:71555521-71556097	SK-N-SH	brain:	n/a	chr1:71555800-71555809
6	ATF1	chr1:71555804-71555967	K562	blood:	n/a	n/a
7	JUND	chr1:71555627-71555966	SK-N-SH	brain:	n/a	chr1:71555800-71555809
8	FOS	chr1:71555614-71555980	MCF10A-Er-Src	breast:	n/a	chr1:71555800-71555809 chr1:71555798-71555809
9	PBX3	chr1:71555539-71556233	SK-N-SH	brain:	n/a	chr1:71556012-71556021

Variant related genes	Relation type
ZRANB2-AS2	TF binding region

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1005748	0.95[AMR][1000 genomes]
rs1005749	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1008484	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10736414	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10789314	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10889906	0.89[ASN][1000 genomes]
rs10889907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12119848	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12122320	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12126880	0.84[EUR][1000 genomes]
rs12131077	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12131515	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12142055	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1474663	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17542551	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1983587	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2050065	0.89[ASN][1000 genomes]
rs2206344	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2244018	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2247098	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2421732	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2744897	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2744898	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2744899	0.81[AMR][1000 genomes]
rs2744900	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2744902	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2744905	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2744906	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2744907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2744908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2744916	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2744918	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2817857	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2817860	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3000466	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs493489	0.83[EUR][1000 genomes]
rs496216	0.83[EUR][1000 genomes]
rs508513	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs510414	0.83[EUR][1000 genomes]
rs532693	0.84[EUR][1000 genomes]
rs579558	0.84[EUR][1000 genomes]
rs584532	0.84[EUR][1000 genomes]
rs61777272	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61777274	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61778911	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61778912	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6424415	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs651265	0.84[EUR][1000 genomes]
rs653699	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs657265	0.84[EUR][1000 genomes]
rs6670515	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6679003	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6690000	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72671088	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7529930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs847704	0.84[EUR][1000 genomes]
rs847705	0.84[EUR][1000 genomes]
rs847735	0.81[AMR][1000 genomes]
rs880099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9970600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71552600-71556000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:71554600-71556600	Enhancers	NHDF-Ad	bronchial
3	chr1:71555000-71556200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:71555000-71556200	Enhancers	Ovary	ovary
5	chr1:71555000-71556400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:71555000-71556600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:71555000-71556600	Enhancers	Placenta Amnion	Placenta Amnion
8	chr1:71555200-71556000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr1:71555200-71556400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:71555200-71556400	Enhancers	NH-A	brain
11	chr1:71555200-71556600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:71555400-71556000	Enhancers	Colon Smooth Muscle	Colon
13	chr1:71555400-71556200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
14	chr1:71555400-71556200	Enhancers	HMEC	breast
15	chr1:71555400-71556200	Enhancers	NHEK	skin
16	chr1:71555400-71556400	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr1:71555600-71556200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:71555600-71556200	Enhancers	HSMM	muscle
19	chr1:71555600-71556400	Enhancers	HSMMtube	muscle
20	chr1:71555600-71560400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr1:71555800-71556000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:71555800-71556200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:71555800-71556200	Flanking Active TSS	Osteobl	bone
24	chr1:71555800-71556400	Enhancers	NHLF	lung
25	chr1:71555800-71556600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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