Variant report

Variant	rs2744902
Chromosome Location	chr1:71507541-71507542
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:71497365..71498885-chr1:71507254..71510170,2	K562	blood:
2	chr1:71032636..71034814-chr1:71507461..71509971,2	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1005748	0.89[AMR][1000 genomes]
rs1005749	0.81[CEU][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1008484	0.90[EUR][1000 genomes]
rs10736414	0.88[EUR][1000 genomes]
rs10789314	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10889907	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12119848	0.81[CEU][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12122320	0.84[AMR][1000 genomes]
rs12131077	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12131515	0.90[CEU][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12142055	0.84[AMR][1000 genomes]
rs12145536	0.90[CEU][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12145635	0.81[CEU][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1474663	0.90[CEU][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17542063	1.00[ASN][1000 genomes]
rs17542551	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1983587	0.86[EUR][1000 genomes]
rs2206344	0.90[CEU][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2244018	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2247098	0.90[EUR][1000 genomes]
rs2421732	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2744897	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2744898	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2744899	0.92[AMR][1000 genomes]
rs2744900	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2744905	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2744906	0.89[AMR][1000 genomes]
rs2744907	0.81[CEU][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2744908	0.81[CEU][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2744916	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2744918	0.90[CEU][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2817857	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2817860	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3000466	0.81[CEU][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs493489	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs496216	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs508513	0.82[CEU][hapmap];0.88[EUR][1000 genomes]
rs510414	1.00[MEX][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs532693	0.85[EUR][1000 genomes]
rs578096	0.82[MEX][hapmap]
rs579558	0.82[MEX][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes]
rs584532	0.85[EUR][1000 genomes]
rs61777272	0.84[AMR][1000 genomes]
rs61777274	0.84[AMR][1000 genomes]
rs61778911	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61778912	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6424415	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs651265	0.92[TSI][hapmap];0.85[EUR][1000 genomes]
rs653699	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs657265	0.85[EUR][1000 genomes]
rs6670515	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6679003	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6690000	0.90[EUR][1000 genomes]
rs72671088	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671095	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7529930	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs847704	0.82[MEX][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes]
rs847705	0.85[EUR][1000 genomes]
rs847735	0.84[EUR][1000 genomes]
rs880099	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9970600	0.90[CEU][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845198	chr1:71274759-71514969	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv546472	chr1:71432984-71541003	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	555 gene(s)	inside rSNPs	diseases
3	nsv461851	chr1:71442626-71507541	Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
4	nsv546473	chr1:71442626-71507541	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
5	esv1850593	chr1:71444149-71514969	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv871242	chr1:71481050-71519326	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71497600-71510600	Weak transcription	Aorta	Aorta
2	chr1:71503000-71511200	Weak transcription	Pancreas	Pancrea
3	chr1:71505000-71511200	Weak transcription	Gastric	stomach
4	chr1:71506200-71507600	Enhancers	Fetal Stomach	stomach
5	chr1:71506200-71507600	Genic enhancers	K562	blood
6	chr1:71506800-71508000	Enhancers	Adipose Nuclei	Adipose
7	chr1:71507000-71508400	Enhancers	NHDF-Ad	bronchial
8	chr1:71507000-71508600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:71507400-71507800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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