Variant report

Variant	rs12145635
Chromosome Location	chr1:71551768-71551769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RFX5	chr1:71551516-71552537	IMR90	lung:	n/a	n/a
2	CEBPB	chr1:71551723-71552523	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:71546796..71548438-chr1:71551662..71553481,2	MCF-7	breast:
2	chr1:71546438..71549487-chr1:71551698..71554336,3	MCF-7	breast:
3	chr1:71547040..71549249-chr1:71549673..71553160,6	K562	blood:

Variant related genes	Relation type
ZRANB2	TF binding region
ENSG00000132485	Chromatin interaction
ENSG00000229956	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1005748	0.95[AMR][1000 genomes]
rs1005749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1008484	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10736414	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10789314	1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10889906	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10889907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12119848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12122320	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12126880	0.84[EUR][1000 genomes]
rs12131077	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12131515	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12142055	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145536	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1474663	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17542551	0.83[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1983587	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2050065	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2206344	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2244018	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2247098	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2421732	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2744897	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2744898	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2744899	0.81[AMR][1000 genomes]
rs2744900	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2744902	0.81[CEU][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2744905	0.83[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2744906	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2744907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2744908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2744916	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2744918	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2817857	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2817860	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3000466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs479934	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs481940	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs493489	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs496216	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs508513	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs510414	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs532693	0.84[EUR][1000 genomes]
rs579558	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs584532	0.84[EUR][1000 genomes]
rs61777272	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61777274	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61778911	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61778912	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6424415	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs647921	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs651265	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs653699	0.82[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs657265	0.84[EUR][1000 genomes]
rs6670515	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6679003	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6690000	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72671088	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72671095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs726764	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7529930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs847704	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs847705	0.84[EUR][1000 genomes]
rs847735	0.81[AMR][1000 genomes]
rs880099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9970600	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9970739	1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71547600-71551800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:71547600-71555200	Weak transcription	Lung	lung
3	chr1:71547600-71555800	Weak transcription	NHLF	lung
4	chr1:71547800-71551800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:71547800-71551800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:71547800-71551800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:71547800-71554600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:71549600-71555200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:71550800-71553400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:71551000-71552000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:71551200-71551800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:71551200-71552400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr1:71551400-71552000	Enhancers	NH-A	brain
14	chr1:71551400-71552400	Enhancers	NHEK	skin
15	chr1:71551400-71553000	Weak transcription	Spleen	Spleen
16	chr1:71551400-71553200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr1:71551600-71552000	Bivalent Enhancer	HMEC	breast
18	chr1:71551600-71552000	Enhancers	HSMMtube	muscle
19	chr1:71551600-71552200	Enhancers	HSMM	muscle
20	chr1:71551600-71552400	Enhancers	Fetal Heart	heart
21	chr1:71551600-71552400	Enhancers	NHDF-Ad	bronchial
22	chr1:71551600-71552600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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