Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10889907	0.84[EUR][1000 genomes]
rs12119848	0.84[EUR][1000 genomes]
rs12122320	0.89[EUR][1000 genomes]
rs12131077	0.87[EUR][1000 genomes]
rs12131515	0.84[EUR][1000 genomes]
rs12142055	0.89[EUR][1000 genomes]
rs12145536	0.84[EUR][1000 genomes]
rs12145635	0.84[EUR][1000 genomes]
rs17542551	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2744905	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2744907	0.84[EUR][1000 genomes]
rs2744908	0.84[EUR][1000 genomes]
rs61777272	0.89[EUR][1000 genomes]
rs61777274	0.89[EUR][1000 genomes]
rs61778911	0.84[EUR][1000 genomes]
rs61778912	0.84[EUR][1000 genomes]
rs72671095	0.84[EUR][1000 genomes]
rs72674952	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7529930	0.84[EUR][1000 genomes]
rs880099	0.84[EUR][1000 genomes]
rs9970600	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949599	chr1:71655652-72327802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1005726	chr1:71701840-71953242	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv1848377	chr1:71718838-71964514	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv531880	chr1:71724941-71964501	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71742400-71751000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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