Variant report

Variant	rs2744905
Chromosome Location	chr1:71516576-71516577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:71515710-71520875	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr1:71516541-71517212	GM12878	blood:	n/a	n/a
3	POLR2A	chr1:71513866-71520382	MCF10A-Er-Src	breast:	n/a	n/a
4	POLR2A	chr1:71515490-71517154	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:70994687..70995382-chr1:71515481..71516643,4	MCF-7	breast:

Variant related genes	Relation type
PTGER3	TF binding region

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1005748	0.89[AMR][1000 genomes]
rs1005749	0.83[CEU][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1008484	0.85[EUR][1000 genomes]
rs10736414	0.84[EUR][1000 genomes]
rs10789314	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10889907	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12119848	0.81[CEU][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12122320	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12126880	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12131077	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12131515	0.91[CEU][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12142055	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12145536	0.91[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12145635	0.83[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1474663	0.90[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17542063	1.00[ASN][1000 genomes]
rs17542551	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1983587	0.81[EUR][1000 genomes]
rs2206344	0.90[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2244018	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2247098	0.85[EUR][1000 genomes]
rs2421732	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2744897	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2744898	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2744899	0.92[AMR][1000 genomes]
rs2744900	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2744902	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2744906	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2744907	0.83[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2744908	0.81[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2744916	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2744918	0.90[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2817857	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2817860	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3000466	0.83[CEU][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs493489	0.81[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs496216	0.81[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs508513	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs532693	0.81[EUR][1000 genomes]
rs579558	0.81[EUR][1000 genomes]
rs584532	0.81[EUR][1000 genomes]
rs61777272	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61777274	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61778911	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61778912	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6424415	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs651265	0.81[EUR][1000 genomes]
rs653699	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs657265	0.81[EUR][1000 genomes]
rs6670515	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6679003	0.82[AMR][1000 genomes]
rs6690000	0.85[EUR][1000 genomes]
rs72671088	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72671095	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7529930	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs847704	0.81[EUR][1000 genomes]
rs847705	0.81[EUR][1000 genomes]
rs880099	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9970600	0.91[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546472	chr1:71432984-71541003	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	555 gene(s)	inside rSNPs	diseases
2	nsv871242	chr1:71481050-71519326	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71513600-71533600	Weak transcription	Lung	lung
2	chr1:71514000-71525000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr1:71514000-71527400	Weak transcription	Colon Smooth Muscle	Colon
4	chr1:71514000-71530600	Weak transcription	Ovary	ovary
5	chr1:71514000-71533600	Weak transcription	Pancreas	Pancrea
6	chr1:71514000-71533600	Weak transcription	Right Ventricle	heart
7	chr1:71514200-71518000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:71514200-71518800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:71514200-71524200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr1:71514200-71533600	Weak transcription	Spleen	Spleen
11	chr1:71514400-71517000	Weak transcription	K562	blood
12	chr1:71514400-71524400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr1:71515800-71521400	Weak transcription	Adipose Nuclei	Adipose
14	chr1:71515800-71522400	Weak transcription	Liver	Liver
15	chr1:71515800-71522800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr1:71515800-71523200	Weak transcription	Dnd41	blood
17	chr1:71515800-71524600	Weak transcription	Fetal Brain Female	brain
18	chr1:71515800-71524800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr1:71515800-71525000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr1:71515800-71525200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr1:71515800-71526000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr1:71515800-71541000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr1:71516000-71520600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:71516000-71524400	Weak transcription	Primary T helper cells PMA-I stimulated	--

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