Variant report

Variant	rs58049964
Chromosome Location	chr11:93897479-93897480
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11828881	0.97[ASN][1000 genomes]
rs56723829	0.85[ASN][1000 genomes]
rs58216749	0.90[ASN][1000 genomes]
rs58863592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58965645	0.85[ASN][1000 genomes]
rs59768849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61671722	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs67060752	1.00[ASN][1000 genomes]
rs7102046	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7120920	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72968739	0.87[ASN][1000 genomes]
rs72968751	0.87[ASN][1000 genomes]
rs72968770	0.85[ASN][1000 genomes]
rs72968772	0.87[ASN][1000 genomes]
rs72968780	0.87[ASN][1000 genomes]
rs72968785	0.85[ASN][1000 genomes]
rs72968788	0.93[ASN][1000 genomes]
rs72968791	0.89[ASN][1000 genomes]
rs72970708	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs72970709	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs72970719	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72970727	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73512252	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7925027	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898183	chr11:93725384-93906735	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1046092	chr11:93833446-93964452	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv898185	chr11:93851048-93927529	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv469980	chr11:93864321-93962121	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv468795	chr11:93864321-93964917	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv555966	chr11:93864321-93964917	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv517664	chr11:93866147-93913036	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93883000-93906600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr11:93883400-93906400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr11:93884000-93912800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr11:93884400-93905400	Weak transcription	Right Ventricle	heart
5	chr11:93885200-93916200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr11:93885400-93899400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr11:93885400-93911200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr11:93885800-93897600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr11:93886000-93903400	Weak transcription	HSMM	muscle
10	chr11:93886000-93905200	Weak transcription	HSMMtube	muscle
11	chr11:93886000-93913000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr11:93886200-93910800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:93886600-93913000	Weak transcription	K562	blood
14	chr11:93886800-93912800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:93887000-93911600	Weak transcription	Duodenum Mucosa	Duodenum
16	chr11:93887400-93898800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr11:93887600-93899400	Weak transcription	Fetal Lung	lung
18	chr11:93887600-93902000	Weak transcription	Gastric	stomach
19	chr11:93887600-93903800	Weak transcription	Left Ventricle	heart
20	chr11:93887600-93904600	Weak transcription	Aorta	Aorta
21	chr11:93887600-93907600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:93887600-93907800	Weak transcription	Colon Smooth Muscle	Colon
23	chr11:93887600-93908200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr11:93887600-93908800	Weak transcription	Adipose Nuclei	Adipose
25	chr11:93887600-93910600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr11:93887600-93910800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr11:93887600-93911600	Weak transcription	Spleen	Spleen
28	chr11:93887800-93899200	Weak transcription	Primary B cells from peripheral blood	blood
29	chr11:93887800-93904800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:93887800-93907800	Weak transcription	HMEC	breast
31	chr11:93887800-93908000	Weak transcription	NH-A	brain
32	chr11:93887800-93910800	Weak transcription	Liver	Liver
33	chr11:93888000-93907200	Weak transcription	NHDF-Ad	bronchial
34	chr11:93889600-93899400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr11:93889600-93908600	Weak transcription	Stomach Smooth Muscle	stomach
36	chr11:93889800-93902000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr11:93889800-93902200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr11:93889800-93902200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr11:93889800-93903800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr11:93889800-93903800	Weak transcription	Dnd41	blood
41	chr11:93889800-93905400	Weak transcription	Fetal Thymus	thymus
42	chr11:93889800-93906600	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr11:93889800-93907400	Weak transcription	Primary T cells from cord blood	blood
44	chr11:93889800-93908200	Weak transcription	NHEK	skin
45	chr11:93889800-93910800	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr11:93889800-93911400	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr11:93889800-93912800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr11:93890200-93900000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr11:93890200-93906600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr11:93890200-93910800	Weak transcription	Thymus	Thymus

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